BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD05FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 801 0.0
>3x_Contig1617
Length = 15119
Score = 801 bits (404), Expect = 0.0
Identities = 418/420 (99%), Gaps = 2/420 (0%)
Strand = Plus / Plus
Query: 88 gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 93
Query: 148 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 153
Query: 208 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 213
Query: 268 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 273
Query: 328 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 333
Query: 388 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 393
Query: 448 tctttttgtcgtaattaggcccccgaaacaactagaccggggatcttctttactgttttc 507
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 tctttttgtcgtaattagg-ccccgaaacaactaga-cggggatcttctttactgttttc 451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,196
Number of Sequences: 1807
Number of extensions: 17196
Number of successful extensions: 229
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)