BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZD05RM1.SCF screened BAC_end
         (902 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig604                                                         1243   0.0  

>3x_Contig604 
          Length = 2699

 Score = 1243 bits (627), Expect = 0.0
 Identities = 638/641 (99%), Gaps = 1/641 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   aaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttggca 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 aaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttggca 1478

                                                                        
Query: 106  tcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgttttagaa 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 tcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgttttagaa 1538

                                                                        
Query: 166  acatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgcagg 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 acatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgcagg 1598

                                                                        
Query: 226  gtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccagatca 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 gtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccagatca 1658

                                                                        
Query: 286  tcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatggat 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 tcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatggat 1718

                                                                        
Query: 346  ccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcattggt 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 ccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcattggt 1778

                                                                        
Query: 406  cggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgatactc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 cggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgatactc 1838

                                                                        
Query: 466  atcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatttca 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 atcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatttca 1898

                                                                        
Query: 526  ctagataaacgcttgtacaaaaaacaatttgtcaaagaaaacgattaattctaatgatta 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 ctagataaacgcttgtacaaaaaacaatttgtcaaagaaaacgattaattctaatgatta 1958

                                                                        
Query: 586  gcanagctgattgtagaacagttttagactctcttc-agtgtacgtatttatggatttcc 644
            ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1959 gcaaagctgattgtagaacagttttagactctcttcaagtgtacgtatttatggatttcc 2018

                                                     
Query: 645  tttgtgttacanaacatgtgtactaaatttcatacgctttt 685
            ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2019 tttgtgttacaaaacatgtgtactaaatttcatacgctttt 2059


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6882
Number of Sequences: 1807
Number of extensions: 6882
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)