BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD06FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig819 1372 0.0
>3x_Contig819
Length = 3350
Score = 1372 bits (692), Expect = 0.0
Identities = 747/759 (98%), Gaps = 5/759 (0%)
Strand = Plus / Minus
Query: 86 ctgcattatatttcaaatatattgacttgtctatggcaagttgtttcaactttgtgtctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctgcattatatttcaaatatattgacttgtctatggcaagttgtttcaactttgtgtctg 699
Query: 146 taattgagctaaaagcggtatccttgttagatccctctgcctctttggcatcgaaatcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 taattgagctaaaagcggtatccttgttagatccctctgcctctttggcatcgaaatcaa 639
Query: 206 gcacttcttgaaactgagtagatatggtattcgccatggacgaccagaatgattttttag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcacttcttgaaactgagtagatatggtattcgccatggacgaccagaatgattttttag 579
Query: 266 aaacagtgttccagtacccttgcgtcaactcttcaactttctccaagttgtcatccaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaacagtgttccagtacccttgcgtcaactcttcaactttctccaagttgtcatccaatt 519
Query: 326 tccccaacatctcttgagccttatttgtaacggtaccgcccaaattctcagggatttgga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tccccaacatctcttgagccttatttgtaacggtaccgcccaaattctcagggatttgga 459
Query: 386 aattcaaagagtccttctctttaacaaaacctaaaatagcctttgaagttttctggagct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aattcaaagagtccttctctttaacaaaacctaaaatagcctttgaagttttctggagct 399
Query: 446 gttcatccacttggtcctcgaacttctgaaacgcctcatcagtcttatcatcatgttttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gttcatccacttggtcctcgaacttctgaaacgcctcatcagtcttatcatcatgttttg 339
Query: 506 tcaccttaacggcatctgcagtctctgttgcagtctcttcatataagaaatccatcgcta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcaccttaacggcatctgcagtctctgttgcagtctcttcatataagaaatccatcgcta 279
Query: 566 aagacgcttttcacgactaatgctaagctagctattaccaaagtaccttaatgtcaccaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagacgcttttcacgactaatgctaagctagctattaccaaagtaccttaatgtcaccaa 219
Query: 626 ataacacgtctggctagatacgctcgacgcttatcgacagacttctcgcgagaactcttt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ataacacgtctggctagatacgctcgacgcttatcgacagacttctcgcgagaactcttt 159
Query: 686 tgttgcgcctccccttcttg-agatc-attcttttaaggttcaaactccaaatgtttcat 743
|||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||
Sbjct: 158 tgttgcgcctccccttcttgaagatcaatcctttaaaggttcaaactccaaatgtttcat 99
Query: 744 gattttccttattattggaccttttcattgcaaagaagaacagtttc-acattgttaaaa 802
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 98 gattttccttattattggaccttttcattgcaaagaagaacagtttcaacatgtctaaaa 39
Query: 803 tacagtaggaaagaag-ctnctcatcttggctctgctca 840
||||||||| |||||| || ||||||||| |||||||||
Sbjct: 38 tacagtagg-aagaagcctcctcatcttgtctctgctca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6384
Number of Sequences: 1807
Number of extensions: 6384
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)