BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZD06RM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1792                                                        1372   0.0  

>3x_Contig1792 
          Length = 28468

 Score = 1372 bits (692), Expect = 0.0
 Identities = 750/765 (98%), Gaps = 5/765 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    ttaatttatctttttgtaatatttccactaatcactgattaaataataatttgtctatta 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14373 ttaatttatctttttgtaatatttccactaatcactgattaaataataatttgtctatta 14314

                                                                         
Query: 108   aatttcaagcttaccgaattacaaccaaacactaaggaatcgtggtccagtcgagtctgg 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14313 aatttcaagcttaccgaattacaaccaaacactaaggaatcgtggtccagtcgagtctgg 14254

                                                                         
Query: 168   gtatcccacagaaaggattcattccatagttgctgtgtgggaattgatgtttatagatat 227
             |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 14253 gtatcccacagaaaggattcattccatagttgctgtgtgggaattgatgtctagagatat 14194

                                                                         
Query: 228   gagaagggcttcgcaacatttgaggttgattggcaaccatttacatgctagaaactacca 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14193 gagaagggcttcgcaacatttgaggttgattggcaaccatttacatgctagaaactacca 14134

                                                                         
Query: 288   caacgttttggttggaagcaaatactcatcgtcttttaaacagtacttgcagctgccaaa 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14133 caacgttttggttggaagcaaatactcatcgtcttttaaacagtacttgcagctgccaaa 14074

                                                                         
Query: 348   cggtgaaattgggtcctatttccacgatgtgccattagacttagatgttgatgccaaaac 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14073 cggtgaaattgggtcctatttccacgatgtgccattagacttagatgttgatgccaaaac 14014

                                                                         
Query: 408   atgtaacatgatcgtagaggttccacgttggagtaatgggaagtttgaaatcagtaagac 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14013 atgtaacatgatcgtagaggttccacgttggagtaatgggaagtttgaaatcagtaagac 13954

                                                                         
Query: 468   cgaaccatttaaccccatcacacaggacataaagaaaggcaagccacgatttgtcaataa 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13953 cgaaccatttaaccccatcacacaggacataaagaaaggcaagccacgatttgtcaataa 13894

                                                                         
Query: 528   cattttcccttaccatggatacattcataactatggggctatcccacagacatgggaaca 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13893 cattttcccttaccatggatacattcataactatggggctatcccacagacatgggaaca 13834

                                                                         
Query: 588   gccacttattgaagtattgcccggtttcaagggtgataatgacccattggactgttgtga 647
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13833 gccacttattgaagtattgcccggtttcaagggtgataatgacccattggactgttgtga 13774

                                                                         
Query: 648   aattggttccagcatcgcc-aaatgggagatatcaaaaaagtaaagcttctanggtcatt 706
             ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 13773 aattggttccagcatcgccaaaatgggagatatcaaaaaagtaaagcttctagggtcatt 13714

                                                                         
Query: 707   agccctcattgacgatgggagactcgattggnaagtcatttgtatcgacatttgaaaatc 766
             ||||||||||||||||||   |||||||||| |||||||||||||||||| ||||| |||
Sbjct: 13713 agccctcattgacgatggagaactcgattggaaagtcatttgtatcgaca-ttgaagatc 13655

                                                          
Query: 767   ccattgcttattaaattgaacaagtttggccagatgtagacactg 811
             ||||||| ||| ||||||||||||||  | |||||||||||||||
Sbjct: 13654 ccattgc-tataaaattgaacaagtt--ggcagatgtagacactg 13613


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6219
Number of Sequences: 1807
Number of extensions: 6219
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)