BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD08FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1049 1009 0.0
>3x_Contig1049
Length = 4107
Score = 1009 bits (509), Expect = 0.0
Identities = 688/729 (94%), Gaps = 14/729 (1%)
Strand = Plus / Plus
Query: 113 ttgggattgaaagggcacctccgaacatatatataggatccttcttcacctttgccaata 172
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 ttgggattgaaagggcac-tccgaacatatatataggatccttcttcacctttgccaata 75
Query: 173 gtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcaggaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcaggaa 135
Query: 233 tgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttgt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttgt 195
Query: 293 cattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatatg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatatg 255
Query: 353 atcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttctt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttctt 315
Query: 413 c-aaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatga 471
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatga 375
Query: 472 gttgatatatgtcatcctccgtcatcattggtttcctagcgtctatt-atatccaaatcg 530
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 376 gttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatcg 435
Query: 531 tggcagtttcttctcatattacgtatattattcagtcattaacgtttt-aaccaaacttt 589
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 436 tggcagtttcttctcatattacgtatattattcagtcataaacgttttaaaccaaacttt 495
Query: 590 tggagttgtctgaaattattgtaacttaatcatagccaatga-ttatttaaacgatttc- 647
|| ||||||||||||| ||||||||||||||||| |||||| |||| ||||||| |||
Sbjct: 496 tgaagttgtctgaaatatttgtaacttaatcatagtcaatgatttatataaacgaattcg 555
Query: 648 aaagtgaaaagaagttagcaattttgcgac-aaccagcttccagtgaaggcaaggaaaat 706
|| |||||| ||||||||||| ||||||| ||||||| |||||| |||||||||| |
Sbjct: 556 aaggtgaaagaaagttagcaatattgcgacaaaccagc-tccagtagaggcaaggaagag 614
Query: 707 tgt-ccaaaatgaccgattgattaaccca-tttcaaatttgtttgga-caaatgatggaa 763
||| | |||||||||||| |||||||||| || ||||| |||||||| ||||||||||||
Sbjct: 615 tgtacaaaaatgaccgatagattaacccagttacaaatatgtttggaccaaatgatggaa 674
Query: 764 catttttgcggggcattaaattttgttcat-agaaccattggttttaaaccaagt-acca 821
|| |||||||| ||| |||||| ||| || ||||||| ||||||| |||||||| || |
Sbjct: 675 caattttgcggtgcagtaaattatgtcgataagaacca-tggttttgaaccaagtaacga 733
Query: 822 ttcagaaga 830
|||||||||
Sbjct: 734 ttcagaaga 742
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7958
Number of Sequences: 1807
Number of extensions: 7958
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)