BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD08RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1409 0.0
>3x_Contig1791
Length = 39945
Score = 1409 bits (711), Expect = 0.0
Identities = 741/750 (98%), Gaps = 1/750 (0%)
Strand = Plus / Minus
Query: 49 cttagctccgtatgtatcaatttcagtactagtttttagacactctgatggctcaaaatc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332 cttagctccgtatgtatcaatttcagtactagtttttagacactctgatggctcaaaatc 19273
Query: 109 gatgaagtttcgtaaagtaatgctggtcaaagaatcattgataagatagtgataaggatc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19272 gatgaagtttcgtaaagtaatgctggtcaaagaatcattgataagatagtgataaggatc 19213
Query: 169 gatatcttcaattgcaaatagagataacgaacttgatgtggaggacattgttcctgtagg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212 gatatcttcaattgcaaatagagataacgaacttgatgtggaggacattgttcctgtagg 19153
Query: 229 aagcgcagcgggcgttaaggaatactggtaggtggcaggattatttttgtttcctaagat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19152 aagcgcagcgggcgttaaggaatactggtaggtggcaggattatttttgtttcctaagat 19093
Query: 289 caagaagggtctctgggcaagccattggcttttgataattttaatcggagagtaggtttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19092 caagaagggtctctgggcaagccattggcttttgataattttaatcggagagtaggtttc 19033
Query: 349 aggaatcatatttaaggctttttcctgggaatttatactctcttcaacatcatagggtgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19032 aggaatcatatttaaggctttttcctgggaatttatactctcttcaacatcatagggtgg 18973
Query: 409 taaaaccgtagtcgggaattcttttgtggtgatgttctcataaagatattctatgtattc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18972 taaaaccgtagtcgggaattcttttgtggtgatgttctcataaagatattctatgtattc 18913
Query: 469 tctcggaaccatcttccctgagcactccgtatcactatgtatcaacttaacgaattctgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18912 tctcggaaccatcttccctgagcactccgtatcactatgtatcaacttaacgaattctgc 18853
Query: 529 cttagtgatcttntctttattatttggattgaagctgtcagtatggagcatcaacaaaga 588
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18852 cttagtgatcttttctttattatttggattgaagctgtcagtatggagcatcaacaaaga 18793
Query: 589 gtaggtaaggaagtataattgttcaatatccttccatattggctccgaattttctattct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18792 gtaggtaaggaagtataattgttcaatatccttccatattggctccgaattttctattct 18733
Query: 649 ttcggcattgcagtgctgtctatagtatgaaacgctgaagcatttcaagaatctttcaat 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18732 ttcggcattgcagtgctgtctatagtatgaaacgctgaagcatttcaagaatctttcaat 18673
Query: 709 ctgttggctttcttttgggagtttcaagaatagtagcactgttcgtaatgattaatctaa 768
||||||||||||||| || |||| | ||||||||||||||||||||||||| |||||||
Sbjct: 18672 ctgttggctttctttgggaagttcaaggaatagtagcactgttcgtaatgataaatctaa 18613
Query: 769 gggttggtttgaaaaaatcaaattccttat 798
|||||||||| ||||||||||||||||||
Sbjct: 18612 tggttggtttg-aaaaatcaaattccttat 18584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7918
Number of Sequences: 1807
Number of extensions: 7918
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)