BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD09FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1211 0.0
>3x_Contig1782
Length = 24703
Score = 1211 bits (611), Expect = 0.0
Identities = 652/663 (98%), Gaps = 2/663 (0%)
Strand = Plus / Plus
Query: 85 catcatggaccctaccagggatcccaatttcaagtcccctcaggaactagacagtgaggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12390 catcatggaccctaccagggatcccaatttcaagtcccctcaggaactagacagtgaggc 12449
Query: 145 acttcaatcaagcaccgatattccaaaaatcggtcctattatcccatatgtgctagctga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12450 acttcaatcaagcaccgatattccaaaaatcggtcctattatcccatatgtgctagctga 12509
Query: 205 ttacaatacagctatagataaaccgattcgtcctcgtaagtataagaaaaatgccattaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12510 ttacaatacagctatagataaaccgattcgtcctcgtaagtataagaaaaatgccattaa 12569
Query: 265 acggaaattggcttcttcgatgacttctaccagtgacgattccaacgaacagcagcatct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12570 acggaaattggcttcttcgatgacttctaccagtgacgattccaacgaacagcagcatct 12629
Query: 325 gtcagcaaattcgaacaatgggttcatcccgttgaaacagagggaactacagccggtgtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12630 gtcagcaaattcgaacaatgggttcatcccgttgaaacagagggaactacagccggtgtc 12689
Query: 385 agctgaaacgagtggtgattctgaatctgaatctgaatctcctgcagaaccggcgaacgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12690 agctgaaacgagtggtgattctgaatctgaatctgaatctcctgcagaaccggcgaacgt 12749
Query: 445 agatttggatatagatccaaatccagaatcggatgaagttatggcttcggctccagtggc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12750 agatttggatatagatccaaatccagaatcggatgaagttatggcttcggctccagtggc 12809
Query: 505 tcatgcatccggttcggtctctggtccatctgggattggcagcagctgctgcagctgctg 564
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12810 tcatgcatccggttcggtctctggtccatctggga-tggcagcagctgctgcagctgctg 12868
Query: 565 catccctcgaccaagagattacttcgagaatttacaagttccaaatcgctgatttggaag 624
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12869 catccctcgaccaagagattacttcgagaattcacaagttccaaatcgctgatttggaag 12928
Query: 625 aagtgcctcatgggattgtgcgtcatgccaacaactggaaggattatcaattcccggttc 684
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 12929 aagtgcctcatgggattgtgcgtcaggccaacaactggaaggattatcaattcccggctc 12988
Query: 685 attgactgaaacacaagttaagaaacttcaataaattgcccttggtcatttgtggcttgt 744
|| |||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct: 12989 atagactgaaacaaaggttaagaaactcaaataaattgcccttggtca-ttgttgcttgt 13047
Query: 745 gga 747
|||
Sbjct: 13048 gga 13050
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6393
Number of Sequences: 1807
Number of extensions: 6393
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)