BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD09RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1025 0.0
>3x_Contig1497
Length = 11582
Score = 1025 bits (517), Expect = 0.0
Identities = 591/613 (96%), Gaps = 2/613 (0%)
Strand = Plus / Minus
Query: 48 aaacttgattttttgaccttgatcttcatcttgtcctttctatatctttcccccgaagaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9810 aaacttgattttttgaccttgatcttcatcttgtcctttctatatctttcccccgaagaa 9751
Query: 108 aaagaaaaattaaaaaaaaaaacgaacagctaactatatgaatagtctcagcttcacgca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9750 aaagaaaaattaaaaaaaaaaacgaacagctaactatatgaatagtctcagcttcacgca 9691
Query: 168 ttggaactgggtggtgctaattagcttacgcattgttatagacctaaactagtcgaaata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690 ttggaactgggtggtgctaattagcttacgcattgttatagacctaaactagtcgaaata 9631
Query: 228 aactactttctgccactcttctttttctctcgctttttttttttttgttcatcacaggct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9630 aactactttctgccactcttctttttctctcgctttttttttttttgttcatcacaggct 9571
Query: 288 ttccattgttgccaaaaatgttgtgcttttaatctttaccaataaaaaaaattaccacgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9570 ttccattgttgccaaaaatgttgtgcttttaatctttaccaataaaaaaaattaccacgc 9511
Query: 348 tccacatataccatattaccacaatccatcacatcactctaccctttctccataccgcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9510 tccacatataccatattaccacaatccatcacatcactctaccctttctccataccgcta 9451
Query: 408 attcaatccggaggtatgcccccattttctcttc-aattttttcttactgattttttcta 466
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 9450 attcaatccggaggtatgccccatttttctcttcaaattttttcttactgattttttcta 9391
Query: 467 tctaactattattgttactctacccggtttatataatactaaagctctattgggaggact 526
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 9390 tctaactattattgttactctacccgttttatataatactaaagctctaatgggaggaca 9331
Query: 527 ttagtagtcttttt-atgaagaggtttttcgcattttcaaaaggttttttaataaagctt 585
|||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 9330 ttagtagtctttttaatgaagaggtttttcgcattttcaaaaggtttttttatcagtctt 9271
Query: 586 tatttacctttctctggcagtaattaacttggaccggtttctggcctgggatgatgatga 645
||| |||||||||||| |||| || ||| ||||| | | ||| |||| |||||||||||
Sbjct: 9270 tatatacctttctctgacagtcatcaacatggacggtatactgtcctgtgatgatgatga 9211
Query: 646 tgatgatgatgaa 658
|||||||||||||
Sbjct: 9210 tgatgatgatgaa 9198
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,524
Number of Sequences: 1807
Number of extensions: 30524
Number of successful extensions: 750
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)