BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZD10FM1.SCF screened BAC_end
         (892 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1581                                                        1342   0.0  

>3x_Contig1581 
          Length = 11429

 Score = 1342 bits (677), Expect = 0.0
 Identities = 730/745 (97%), Gaps = 2/745 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   taacagaatgcaccaaggaaactggaatcaaagatgtggatttatgagaggtaatatgcc 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6000 taacagaatgcaccaaggaaactggaatcaaagatgtggatttatgagaggtaatatgcc 5941

                                                                        
Query: 145  ctacaaattggaaaatacccattgggaaagttgtataccatatgactttagatggtacca 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 ctacaaattggaaaatacccattgggaaagttgtataccatatgactttagatggtacca 5881

                                                                        
Query: 205  ggaaagtgtttaatatgcatctcgaaaatgatccattcaaataagtgggtagaattcctt 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5880 ggaaagtgtttaatatgcatctcgaaaatgatccattcaaataagtgggtagaattcctt 5821

                                                                        
Query: 265  ccgggaagtttagaactgtattcttcaattttgatgaagatacctgtggtgcatgcaaat 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5820 ccgggaagtttagaactgtattcttcaattttgatgaagatacctgtggtgcatgcaaat 5761

                                                                        
Query: 325  agttagcaaacgttacaaacgcgagacatagcgatgcgcttagaaggaactgcaattccg 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5760 agttagcaaacgttacaaacgcgagacatagcgatgcgcttagaaggaactgcaattccg 5701

                                                                        
Query: 385  ttaaaccaacaggatgtggaaatcgggataaaatggcttttgacaggtttgatgaaacag 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5700 ttaaaccaacaggatgtggaaatcgggataaaatggcttttgacaggtttgatgaaacag 5641

                                                                        
Query: 445  aagaagtcatataccatataaggcataaaatagatatgtgaacattcacttccggtaaat 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5640 aagaagtcatataccatataaggcataaaatagatatgtgaacattcacttccggtaaat 5581

                                                                        
Query: 505  actcttgtacatccttgggaaatagattgacaaattgctctttccacgtctgattttgca 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580 actcttgtacatccttgggaaatagattgacaaattgctctttccacgtctgattttgca 5521

                                                                        
Query: 565  gtcttctgacctcattgaacgaagttgaatgtttatgagacctgtaattttcctggaacg 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5520 gtcttctgacctcattgaacgaagttgaatgtttatgagacctgtaattttcctggaacg 5461

                                                                        
Query: 625  gtatttgtacctggttgacaaagttaacattctg-aaatgttttattgatcgaaggacgg 683
            ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 5460 gtatttgtacctggttgacaaagttaaca-tctgaaaatgttttattgatcgaaggacgg 5402

                                                                        
Query: 684  cgcttcgaagtgacgctcttggaagttacaatcatttttcgcttattttattcacacttt 743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5401 cgcttcgaagtgacgctcttggaagttacaatcatttttcgcttattttattcacacctt 5342

                                                                        
Query: 744  cttaaaatcaataaagccagtggaacgaaatttgatgaatattatttaccaaacgaatga 803
            ||||||||||||||||| ||||||||||| ||  ||||  || ||||| |||||||  ||
Sbjct: 5341 cttaaaatcaataaagcgagtggaacgaagttgaatgagaataatttagcaaacgataga 5282

                                     
Query: 804  attgatcgaaaagaactgtttcttt 828
            || ||||||||||||||||| ||||
Sbjct: 5281 atagatcgaaaagaactgttacttt 5257


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,043
Number of Sequences: 1807
Number of extensions: 12043
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)