BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD10RM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1407 0.0
>3x_Contig1640
Length = 15521
Score = 1407 bits (710), Expect = 0.0
Identities = 790/809 (97%), Gaps = 7/809 (0%)
Strand = Plus / Plus
Query: 48 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 5380
Query: 108 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5381 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 5440
Query: 168 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 5500
Query: 228 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5501 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 5560
Query: 288 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5561 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 5620
Query: 348 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 5680
Query: 408 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5681 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 5740
Query: 468 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 5800
Query: 528 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5801 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 5860
Query: 588 gcaataggaaagagggctatgaggaaagaagaaa--tacaaaagattgtgtcctagaaca 645
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5861 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 5920
Query: 646 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5921 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 5980
Query: 706 gcttctttttt-aattttcgtcaagccattcc-aaaattctggagtgaagtaactgatga 763
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5981 gcttcttttttcaattttcgtcaagccattccaaaaattctggagtgaagtaactgatga 6040
Query: 764 ttaagcgagccccgcctttga-gaaaccattgtgcgattc-aaggcaatactttt-aaat 820
|||||||||| || || ||| ||| |||| ||||||||| |||||||||||||| ||||
Sbjct: 6041 ttaagcgagcaccagctctgaggaacccatagtgcgattcaaaggcaatacttttcaaat 6100
Query: 821 ttacaacacctttttttgcagcagcatgt 849
|||||||| || | |||||||||||||
Sbjct: 6101 caacaacacccttctctgcagcagcatgt 6129
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7632
Number of Sequences: 1807
Number of extensions: 7632
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)