BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD11FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1193 735 0.0
>3x_Contig1193
Length = 4968
Score = 735 bits (371), Expect = 0.0
Identities = 413/419 (98%), Gaps = 6/419 (1%)
Strand = Plus / Plus
Query: 87 agcagcagaattattgattgacagattccctctaccaagattcattgatactgaggctgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 agcagcagaattattgattgacagattccctctaccaagattcattgatactgaggctgg 4517
Query: 147 cggttcgcaagccagattcttgttatccaagttgaacccatctgacagttatcaaagtgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 cggttcgcaagccagattcttgttatccaagttgaacccatctgacagttatcaaagtgg 4577
Query: 207 tgctgtcgctggttcaactatcgtgttgactgatgatgtttctttacaaaatttcatgtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 tgctgtcgctggttcaactatcgtgttgactgatgatgtttctttacaaaatttcatgtc 4637
Query: 267 ccacttgcaacaagtaactgttaatggtcaaacataattattgtcctgatggcagtagtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 ccacttgcaacaagtaactgttaatggtcaaacataattattgtcctgatggcagtagtg 4697
Query: 327 ttgaacataccatgcttatgctttccaaccaggtacatatttgataaaaatctcataaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 ttgaacataccatgcttatgctttccaaccaggtacatatttgataaaaatctcataaag 4757
Query: 387 cgttttatgagcatatgttatataaattagtcctatataatgata-ctgattgctaaatt 445
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4758 cgttttatgagcatatgttatataaattagtcctatataatgatacctgattgctaaatt 4817
Query: 446 actaaaccagggtcattaaagttcgaatacccacatatctaaagacgtaccatcaaaaa 504
||||||||| ||||| ||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 4818 actaaacca-ggtca-taaagttcgaata-ccacatatct-aagacgta-catcaaaaa 4871
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6774
Number of Sequences: 1807
Number of extensions: 6774
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)