BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZD11RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1501 0.0
>3x_Contig1668
Length = 13429
Score = 1501 bits (757), Expect = 0.0
Identities = 856/884 (96%), Gaps = 4/884 (0%)
Strand = Plus / Minus
Query: 44 gcttcttaaaggaatctaattctttctttcaaatgacgcttattttcagctaatttattc 103
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 2859 gcttcttaaaggaatctaattctccctt-caaatgacgcttattttcagctaatttattc 2801
Query: 104 aacccttctattaactgttcagcttgtgctttccacgccacggatttatttgaaatatcc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 aacccttctattaactgttcagcttgtgctttccacgccacggatttatttgaaatatcc 2741
Query: 164 tgaactaagttatcattgaagcgttttgcgtattctttaggcatatcctgttgttttttt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2740 tgaactaagttatcattgaagcgttttgcgtattctttaggcatatcctgttgctgaagt 2681
Query: 224 aactgttgaatgtcgttaaaggtcaaaagatccacattttgaggtagctcaacatcggag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 aactgttgaatgtcgttaaaggtcaaaagatccacattttgaggtagctcaacatcggag 2621
Query: 284 caatggagtgattcggtagactttggacgatctggcctaggcggtaattcaggtaatgac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 caatggagtgattcggtagactttggacgatctggcctaggcggtaattcaggtaatgac 2561
Query: 344 atgttgatagattggtgttgtcatgaaccactactgacttttgacttttggctaagcata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 atgttgatagattggtgttgtcatgaaccactactgacttttgacttttggctaagcata 2501
Query: 404 acaaagtaagttctgatccattgttttttaagatccattttaaccttaaatatggactta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 acaaagtaagttctgatccattgttttttaagatccattttaaccttaaatatggactta 2441
Query: 464 taaaaagagaaggtgcaataaccaaaagaaatacccaaagccatccaaaaggaggcatcg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2440 taaaaagagaaggtgcaataaccaaaagaaatacccaaagccatccaaaaggaggcatcg 2381
Query: 524 tacgtagcattcgaactaagtaacatacccatgaaataagcttcaaggtatacattaatt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2380 tacgtagcattcgaactaagtaacatacccatgaaataagcttcaaggtatacattaatt 2321
Query: 584 atacactttatttagttttatagggaccatttggtatataactgaggttcagatttagaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2320 atacactttatttagttttatagggaccatttggtatataactgaggttcagatttagaa 2261
Query: 644 atactttgaatgtcgatttcatcattcttctttaactcggtctcaccttcgacatctgct 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2260 atactttgaatgtcgatttcatcattcttctttaactcggtctcaccttcgacatctgct 2201
Query: 704 ttctccattanggagatatcagtttcactcttctggtctgatgataatacaattctctta 763
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2200 ttctccattagggagatatcagtttcactcttctggtctgatgataatacaattctctta 2141
Query: 764 gtgatctgaagtttagctaagtgcgagtttatgtctttttatttggttggtcagctttta 823
|||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct: 2140 gtgatctgtagttcagctaagtgcgagtttatgtc-ttttatttgtttggtcagctttaa 2082
Query: 824 tctttcatttacaaacctttttgtctccttgagaataaatttttcttttagcccttaatg 883
|||||||||||| ||||| | |||||||||||| |||||||| ||||| || |||| |||
Sbjct: 2081 tctttcatttaccaacctctctgtctccttgag-ataaatttctctttcag-ccttcatg 2024
Query: 884 gatttttttagctgatacagtttcttggaattgaaatccagctt 927
||||||| |||||||| ||||||| | | ||||||||||||||
Sbjct: 2023 gatttttctagctgatcaagtttctggaatttgaaatccagctt 1980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8245
Number of Sequences: 1807
Number of extensions: 8245
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)