BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE01FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1183 0.0
>3x_Contig1738
Length = 21411
Score = 1183 bits (597), Expect = 0.0
Identities = 696/721 (96%), Gaps = 6/721 (0%)
Strand = Plus / Minus
Query: 89 agttagggtagtgcattgcgctgtggtgatttataacgggatctgctcaggggtcgaatg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18917 agttagggtagtgcattgcgctgtggtgatttataacgggatctgctcaggggtcgaatg 18858
Query: 149 aggtgtctgggtttcgatgcccacgtctagccagtcaagcaactcttgaggaaatgggta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18857 aggtgtctgggtttcgatgcccacgtctagccagtcaagcaactcttgaggaaatgggta 18798
Query: 209 ttatgatcagtaataccacattcctgctgctaaagcagcagcaactagtggtgaacatgt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18797 ttatgatcagtaataccacattcctgctgctaaagcagcagcaactagtggtgaacatgt 18738
Query: 269 atcttgtaagagaaactcggtgttccatattgggtcttataatagtagcagtggtagtgg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18737 atcttgtaagagaaactcggtgttccatattgggtcttataatagtagcagtggtagtgg 18678
Query: 329 cagtagctgaaccattactataagctttcgatcaaatttttgaggtttgaatcgaacaac 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18677 cagtagctgaaccattactataagctttcgatcaaatttttgaggtttgaatcgaacaac 18618
Query: 389 tcggatcttattggcatgtccaaggagtagaacggatccttcatcacatagtcactgtaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18617 tcggatcttattggcatgtccaaggagtagaacggatccttcatcacatagtcactgtaa 18558
Query: 449 atgcagtagattttacgtaatatgttttcggcgatgctgacacttgtattgttcctgaaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18557 atgcagtagattttacgtaatatgttttcggcgatgctgacacttgtattgttcctgaaa 18498
Query: 509 ttgttcgtgcttatcagcacgaatttgatgcccgttaagctttggaat-agaacattgag 567
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 18497 ttgttcgtgcttatcagcacgaatttgatgcccgttaagctttggaataagaacattgag 18438
Query: 568 aactcatccgtaatcatgtgtctgagtccactctttattcaattcgtgaacggttctt-g 626
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 18437 aactcatccgtaatcatgtgtctgagtccactcttattccaattcgtgaacggttcttgg 18378
Query: 627 aaatagtcccgtcccat-aaactttct-attgccaaggtgccatcttgttctcggtactc 684
||||||||| ||||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 18377 aaatagtccggtcccataaaacttcctaattgcaaaggtgccatcttgttctcggtactc 18318
Query: 685 ac-ccaatttcagggattgtaaggtacctgggtcttagttttttgtgaaaacttgttact 743
|| |||||| |||||| |||||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 18317 acgccaattccaggga-tgtaaggtacctgggtctcagttttctgtgaagacttgttact 18259
Query: 744 gatttgaaccggctttggggtgagctggcttgcgatcgcaaaaaccctgggtaccgttcc 803
||||||||| | ||| || ||||||||||| |||||||| ||||| ||| ||| ||||||
Sbjct: 18258 gatttgaacggccttcggtgtgagctggctggcgatcgcgaaaacactgtgtaacgttcc 18199
Query: 804 c 804
|
Sbjct: 18198 c 18198
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4758
Number of Sequences: 1807
Number of extensions: 4758
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)