BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE01RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig257 692 0.0
>3x_Contig257
Length = 1630
Score = 692 bits (349), Expect = 0.0
Identities = 415/432 (96%), Gaps = 4/432 (0%)
Strand = Plus / Minus
Query: 320 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 1571
Query: 380 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 1511
Query: 440 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 1451
Query: 500 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 1391
Query: 560 ttgccanagcccaactttgaatagacacttcaccgggattgaagacataactgtgttaag 619
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 1390 ttgccaaagcccaactttgaatagacacttcacc-ggattgaagacataactgtgtaaag 1332
Query: 620 gtagtacagtagcagaatatcttgttacttttcgacaaaa-gaaaacaatct-aagggcc 677
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1331 taagtacagtagcagaatatcttgttacttttcgacaaaaggaaaacaatctcaagggcc 1272
Query: 678 aagccggggatctgacttggaacgctgatgtattttttaacctcttttggtttacatttg 737
||||||| |||||| || ||||||||||||||||||||| |||||| |||||||||
Sbjct: 1271 aagccggtgatctgtactgtaacgctgatgtattttttaacatctttt-gtttacattgt 1213
Query: 738 ggccatggtggt 749
|| |||||||||
Sbjct: 1212 gggcatggtggt 1201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7761
Number of Sequences: 1807
Number of extensions: 7761
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)