BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE02FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1082 0.0
>3x_Contig1791
Length = 39945
Score = 1082 bits (546), Expect = 0.0
Identities = 635/658 (96%), Gaps = 5/658 (0%)
Strand = Plus / Plus
Query: 87 ttgcaaaacttctcgattcttcaacaaagttgtgctagtagatggaatggtaaattgggc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30865 ttgcaaaacttctcgattcttcaacaaagttgtgctagtagatggaatggtaaattgggc 30924
Query: 147 tccaataagagtgaaacatttgtttatatagcgctccacattttgctgctgatttctact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30925 tccaataagagtgaaacatttgtttatatagcgctccacattttgctgctgatttctact 30984
Query: 207 aacagcttgcttaaccttggcaatattataatgcaaaagtaatgagggatcgttaaacat 266
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30985 aacagcttgcaaaaccttggcaatattataatgcaaaagtaatgagggatcgttaaacat 31044
Query: 267 ttgaatgtgctccactctttcaatccacctcgttaactcaacaatgttaccagtttgact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31045 ttgaatgtgctccactctttcaatccacctcgttaactcaacaatgttaccagtttgact 31104
Query: 327 gacagcttcaatacccatattcaacaaatctccgtcattatcgaccaagaatcccttcgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31105 gacagcttcaatacccatattcaacaaatctccgtcattatcgaccaagaatcccttcgt 31164
Query: 387 ctcaggaagatgcactttaaccttcatcaatagttcttcgtatagttgatggctatacat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31165 ctcaggaagatgcactttaaccttcatcaatagttcttcgtatagttgatggctatacat 31224
Query: 447 tgactttaacattttcatatttgatgacttaaccagttctgaactagtggtagaattagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31225 tgactttaacattttcatatttgatgacttaaccagttctgaactagtggtagaattagc 31284
Query: 507 tgatagcttaaaatcaccaagagcttcaaaacagtcttgagccattttcc-gttttttga 565
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 31285 tgatagcttaaaatcaccaagagcttcaaaacagtcttgagccattttccagttttttga 31344
Query: 566 atattgcagttcttctatttttgtggtttaattcccagtag-aaacattttta-cacacc 623
|||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||
Sbjct: 31345 atattgcagttcttctatttttgtggttaaattcccagtagaaaacatctttagcacacc 31404
Query: 624 acctacagcgtctacatccccaattttggcattagtgttctgaatacattgc-attagtc 682
|||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||
Sbjct: 31405 acctacagcgtctacatccccaatttcggcatatgtgttctgaatacattgcaataagtc 31464
Query: 683 gggggaacccaaaaacgaagttccggggttcctataactttgcttcaaggaaaagcgc 740
|| ||| ||||| |||| |||||| | | |||||||||||| |||||| |||||||
Sbjct: 31465 ggtggacgccaaagacgaggttccgtgttctctataactttgc-tcaaggtaaagcgc 31521
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7110
Number of Sequences: 1807
Number of extensions: 7110
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)