BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE02RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1246 1237 0.0
>3x_Contig1246
Length = 5473
Score = 1237 bits (624), Expect = 0.0
Identities = 654/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 44 gcttgcatataaagggcctatgataatctcacaagctcctatatccggtttgaattttgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 gcttgcatataaagggcctatgataatctcacaagctcctatatccggtttgaattttgt 4657
Query: 104 ttaaagaccgtgactagtacagttcggagttgcaggagaaatgacccgtcacacaagtta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4658 ttaaagaccgtgactagtacagttcggagttgcaggagaaatgacccgtcacacaagtta 4717
Query: 164 aaaccttaaaatttggaaacggtaaattgtacttttgctaagtgtacaattgtttgtaca 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4718 aaaccttaaaatttggaaacggtaaattgtacttttgctaagtgtacaattgtttgcaca 4777
Query: 224 atattcagaaggataagcagagcatgctacatatttaatttataactactataatccttc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 atattcagaaggataagcagagcatgctacatatttaatttataactactataatccttc 4837
Query: 284 tatatgctaaaaagaccatcgaaacttagcctgccagaaatgtgcaactcccgtaaggtt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 tatatgctaaaaagaccatcgaaacttagcctgccagaaatgtgcaactcccgtaaggtt 4897
Query: 344 ttaagcctatgtggaggttgtgaacgacatcatttcttcctaaattagtcattatacaag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 ttaagcctatgtggaggttgtgaacgacatcatttcttcctaaattagtcattatacaag 4957
Query: 404 cgtcatctcattatctcatatatcgaaaagtcttttataccacgtgatatcaatgttaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 cgtcatctcattatctcatatatcgaaaagtcttttataccacgtgatatcaatgttaat 5017
Query: 464 ttcgacaacatgaattggcgctacaatacgaagcgaaatttgaggatgaggtgaaacata 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 ttcgacaacatgaattggcgctacaatacgaagcgaaatttgaggatgaggtgaaacata 5077
Query: 524 acatcaagaacttttagttattggccatagtaagatagtgtttcgcttgaccttctcaac 583
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 acatcaagaactttcagttattggccatagtaagatagtgtttcgcttgaccttctcaac 5137
Query: 584 caatggggatccanattgattttgtacaaagactaggatttttgcacaaa-tgaaacgat 642
||||||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 5138 caatgggaatccaaatcgattttgtacaaagactaggattttgcaacaaattgaaacgat 5197
Query: 643 ttacttcctcttagtcatggagcataaacagatttcctcactgccaagtaattctgtttc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5198 ttacttcctcttagtcatggagcataaacagatttcctcactgccaagtaattctgtttc 5257
Query: 703 gtt 705
|||
Sbjct: 5258 gtt 5260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6213
Number of Sequences: 1807
Number of extensions: 6213
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)