BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZE03FM1.SCF screened BAC_end
         (943 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig936                                                          987   0.0  

>3x_Contig936 
          Length = 3539

 Score =  987 bits (498), Expect = 0.0
 Identities = 531/538 (98%), Gaps = 3/538 (0%)
 Strand = Plus / Minus

                                                                        
Query: 216  ccatatgctaaagtcttaccggaacctgtgctagccttacccatgatattatgtcctttc 275
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3431 ccatatgttaaagtcttaccggaacctgtgctagccttacccatgatattatg-cctttc 3373

                                                                        
Query: 276  agagctaaaggaatagatttcaattgaatttctgtaggcctggtgaagccaagcccagag 335
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3372 agagctaaaggaatagagttcaattgaatttctgtaggcctggtgaagccaagcccagag 3313

                                                                        
Query: 336  agtcctttcagcactgtgaatgagagatccatattttcggaccactcaggaagtactgga 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3312 agtcctttcagcactgtgaatgagagatccatattttcggaccactcaggaagtactgga 3253

                                                                        
Query: 396  ggctcttgatcatcgatatcgacgttagaggaaaatacgttgctctgtaataagtcatca 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3252 ggctcttgatcatcgatatcgacgttagaggaaaatacgttgctctgtaataagtcatca 3193

                                                                        
Query: 456  tttgtttgatcttcagtgacaacagtacctgcttcccccttaacattttccttctcggat 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3192 tttgtttgatcttcagtgacaacagtacctgcttcccccttaacattttccttctcggat 3133

                                                                        
Query: 516  ctttcttcttcttgatcttctgcttcttctccctcttctccttcttcttcagtggacaca 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3132 ctttcttcttcttgatcttctgcttcttctccctcttctccttcttcttcagtggacaca 3073

                                                                        
Query: 576  tggaactcgctctcttcatcatccgaagctgcacttaactcaccctccttgatatcgtca 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3072 tggaactcgctctcttcatcatccgaagctgcacttaactcaccctccttgatatcgtca 3013

                                                                        
Query: 636  aaattcttgaattcaattaatttatccatgttgacatcttcatcatcctcttggaaaacg 695
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3012 aaattcttgaattcaattaattcatccatgttgacatcttcatcatcctcttggaaaacg 2953

                                                                      
Query: 696  atattatccttttccttcacttgctccggcttctttcttanacgttcttgttatcttt 753
            |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 2952 atattatccttttcctccacttgctccggc-tctttctta-acgttcttgttatcttt 2897


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8682
Number of Sequences: 1807
Number of extensions: 8682
Number of successful extensions: 167
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)