BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZE03RM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig939                                                         1576   0.0  

>3x_Contig939 
          Length = 3877

 Score = 1576 bits (795), Expect = 0.0
 Identities = 848/862 (98%), Gaps = 3/862 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   agttgcaattagagcaacttgagaacgattttgctcctgcttctccaaattctgaaatta 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371  agttgcaattagagcaacttgagaacgattttgctcctgcttctccaaattctgaaatta 430

                                                                        
Query: 110  aatcaaactgaacatcatatagcaatatagaaatgccctgtatataatacacatcattca 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431  aatcaaactgaacatcatatagcaatatagaaatgccctgtatataatacacatcattca 490

                                                                        
Query: 170  acgccatttctccagatttatacaccatatcaatcaaattgatatctgtattcacaagtt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491  acgccatttctccagatttatacaccatatcaatcaaattgatatctgtattcacaagtt 550

                                                                        
Query: 230  gtagcaacttttgtctatttaatgctctaaagtctaaaaatataagaatgagcttgtctc 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  gtagcaacttttgtctatttaatgctctaaagtctaaaaatataagaatgagcttgtctc 610

                                                                        
Query: 290  acttttacacatcgttttgtggagtagaagactctgtgtttttgttgtccaacaatcttt 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  acttttacacatcgttttgtggagtagaagactctgtgtttttgttgtccaacaatcttt 670

                                                                        
Query: 350  cttcgagaacctgtagggctaactttttccttctttcttccgcttcagagccttcaacag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  cttcgagaacctgtagggctaactttttccttctttcttccgcttcagagccttcaacag 730

                                                                        
Query: 410  gcttagcacccctcttttgagccaaaatgttagcttgttcgatatcgtatactctaaacg 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  gcttagcacccctcttttgagccaaaatgttagcttgttcgatatcgtatactctaaacg 790

                                                                        
Query: 470  gagttgcaatacgccaatcaacaataaacttctggtaaaggtaatcaaatattggctcaa 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  gagttgcaatacgccaatcaacaataaacttctggtaaaggtaatcaaatattggctcaa 850

                                                                        
Query: 530  gtactggtttgactaaatccgggaagaaatatatcaattggaatgtctcagaggcatctc 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  gtactggtttgactaaatccgggaagaaatatatcaattggaatgtctcagaggcatctc 910

                                                                        
Query: 590  ctaccacttcaaattcagcatcctcagccatcgaagcaggtagcctctgatagaatctca 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  ctaccacttcaaattcagcatcctcagccatcgaagcaggtagcctctgatagaatctca 970

                                                                        
Query: 650  agtagaaataacaggtgaaaaaagtgatccaaattgataataactgagagaagtggtgga 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  agtagaaataacaggtgaaaaaagtgatccaaattgataataactgagagaagtggtgga 1030

                                                                        
Query: 710  accacagaagttgcacaaacgaaagcacaagtagagtaaatattggcaggagtttaaatc 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 accacagaagttgcacaaacgaaagcacaagtagagtaaatattggcaggagtttaaatc 1090

                                                                        
Query: 770  tgaaattcttgg-aatgaaaggtagattcttagtctcgaaaatggtagtttctgggaata 828
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tgaaattcttggaaatgaaaggtagattcttagtctcgaaaatggtagtttctgggaata 1150

                                                                        
Query: 829  cctgtttgtagat-ataaggaaccccacccaaaatgtataattaccctnccttggtaaat 887
             |||||||||||| ||| ||||||||||| ||| |||||||||||| | |  ||||||||
Sbjct: 1151 actgtttgtagataatagggaaccccaccaaaattgtataattaccatccaatggtaaat 1210

                                  
Query: 888  tcaaactctattgttgacgaaa 909
             ||| || ||||| ||||||||
Sbjct: 1211 ccaacct-tattgctgacgaaa 1231


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7455
Number of Sequences: 1807
Number of extensions: 7455
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)