BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE04RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1245 0.0
>3x_Contig1253
Length = 5628
Score = 1245 bits (628), Expect = 0.0
Identities = 661/667 (99%), Gaps = 4/667 (0%)
Strand = Plus / Plus
Query: 49 acgtcttacgttctgcaattgattcacctcagcaactttggatgactggaaactcaacaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 acgtcttacgttctgcaattgattcacctcagcaactttggatgactggaaactcaacaa 2850
Query: 109 gtaagggagttcatgaaacctgatagcagatgtagcaaagtggcccaaagtatttgctaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 gtaagggagttcatgaaacctgatagcagatgtagcaaagtggcccaaagtatttgctaa 2910
Query: 169 aaccattcgaacatatccatccgtctgaggagactgacatattttgttcaatcttggcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2911 aaccattcgaacatatccatccgtctgaggagactgacatattttgttcaatcttggcaa 2970
Query: 229 aatataatcgacaaaaacattagcgttagtgtggtaaatagtttcggtgataagcaaaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2971 aatataatcgacaaaaacattagcgttagtgtggtaaatagtttcggtgataagcaaaag 3030
Query: 289 ttgagcagtaaccttaattgctagagccttcacattggaattttcatcaaaaaccataaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3031 ttgagcagtaaccttaattgctagagccttcacattggaattttcatcaaaaaccataaa 3090
Query: 349 cataacaaacggaagcactcgatctaatttattggtatctgatatatattgactcaatat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3091 cataacaaacggaagcactcgatctaatttattggtatctgatatatattgactcaatat 3150
Query: 409 taatatcatttctaagcaacgttctttattctttggattgattaggtttcgaaggcaatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3151 taatatcatttctaagcaacgttctttattctttggattgattaggtttcgaaggcaatg 3210
Query: 469 caagagagttgcgagaaacaaaagtgcgctttgattttgtacagactcgccgctcatagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3211 caagagagttgcgagaaacaaaagtgcgctttgattttgtacagactcgccgctcatagt 3270
Query: 529 gctgaatntctgtaatttaatctggcccactccatttatcataattgtatcagtaacaaa 588
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3271 gctgaatttctgtaatttaatctggcccactccatttatcataattgtatcagtaacaaa 3330
Query: 589 tgacagctcatccccgtcaattatgagatcagatttattaagaggatactcaccagtgat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3331 tgacagctcatccccgtcaattatgagatcagatttattaagaggatactcaccagtgat 3390
Query: 649 acatattttgggagaaattctttgaatattttagtgacggtggttatcaagaatcttttt 708
||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||| |||
Sbjct: 3391 acatatttt-ggagaaa-tctttgaatattttagtgacggtgg-tatcaag-atctcttt 3446
Query: 709 tacgttc 715
|||||||
Sbjct: 3447 tacgttc 3453
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8636
Number of Sequences: 1807
Number of extensions: 8636
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)