BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZE05RM1.SCF screened BAC_end (906 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1665 1227 0.0 >3x_Contig1665 Length = 15710 Score = 1227 bits (619), Expect = 0.0 Identities = 716/741 (96%), Gaps = 7/741 (0%) Strand = Plus / Plus Query: 79 atgtatttgagaagtgtatgtagtgacagagaaccaaacaatgcaacaccataaatgtag 138 |||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||| Sbjct: 51 atgtatttgagaagtgtatgtagtgaaagagaaaaaaacaatgaaacaaaataaatgtag 110 Query: 139 ccaaaatgtactttccctgctgtaagtaataatattccgaacattaaccaaaagataatg 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 ccaaaatgtactttccctgctgtaagtaataatattccgaacattaaccaaaagataatg 170 Query: 199 ggcccagcaagatcggaatcctcctggatttctttcgataaacctttgtgagaaagcggt 258 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 171 ggcccagcaagatcggaatcctcctggatgtctttcgataaacctttgtgagaaagcggt 230 Query: 259 actaacacaaattttgtcttagcaattatacggttgaaattgattcccaattcttcaagc 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 actaacacaaattttgtcttagcaattatacggttgaaattgattcccaattcttcaagc 290 Query: 319 aaagaaggttcgaatgaatacccacgggtagataaggcattaaaaagacctggtgtcaac 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 aaagaaggttcgaatgaatacccacgggtagataaggcattaaaaagacctggtgtcaac 350 Query: 379 tgctcatttgtgaaattagctggcgtaccactaggtttactgccaccgaaatccatgcca 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 tgctcatttgtgaaattagctggcgtaccactaggtttactgccaccgaaatccatgcca 410 Query: 439 gatccctgcatcccatttccaaaagccatagatccttgagggaacgaatactgttgtgat 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 gatccctgcatcccatttccaaaagccatagatccttgagggaacgaatactgttgtgat 470 Query: 499 ggctggtaaaacccgttcgtgttactatttgcatcaatggagggaattgaaggttggtga 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 ggctggtaaaacccgttcgtgttactatttgcatcaatggagggaattgaaggttggtga 530 Query: 559 tatgacatcttttattcgatatttattggtccaggagaggaaagacaaaaacacaaagtc 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 tatgacatcttttattcgatatttattggtccaggagaggaaagacaaaaacacaaagtc 590 Query: 619 aagcaattntgcttgtgatgctcaacgtattaagatatatgcctggatttgcttggcttt 678 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 591 aagcaattttgcttgtgatgctcaacgtattaagatatatg-ctggatttgcttggcttt 649 Query: 679 tatcaaggttatctgtctgctttggtcattggtttcacggcaataggaaaagtttcagat 738 |||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||| Sbjct: 650 tatcaaggttatctgtctgctttgttcattgttttcacggcaata-gaaaaggttcagat 708 Query: 739 tcaaaacttttggtttccttttttttttattggggggttggacatgtattgggaaaacca 798 || ||||||||| |||||||||||||| || || |||| |||||||| | |||||| || Sbjct: 709 tc-aaacttttgttttcctttttttttcat--ggtggtt-gacatgtaattggaaaaaca 764 Query: 799 tgtcgaa-taatatgttatgt 818 ||||||| |||||||| |||| Sbjct: 765 tgtcgaattaatatgtaatgt 785 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7560 Number of Sequences: 1807 Number of extensions: 7560 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 906 length of database: 10,358,551 effective HSP length: 16 effective length of query: 890 effective length of database: 10,329,639 effective search space: 9193378710 effective search space used: 9193378710 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)