BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE06FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1632 1227 0.0
>3x_Contig1632
Length = 13927
Score = 1227 bits (619), Expect = 0.0
Identities = 693/709 (97%), Gaps = 8/709 (1%)
Strand = Plus / Plus
Query: 86 tgggtgttccaaccaagattgccagaggtaccattgaaattgtctctgacgttaaggtcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 tgggtgttccaaccaagattgccagaggtaccattgaaattgtctctgacgttaaggtcg 1528
Query: 146 ttgacgctggtaagagagtcggtgcttctgaagcttctttgttgaacttgttgaacattt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 ttgacgctggtaagagagtcggtgcttctgaagcttctttgttgaacttgttgaacattt 1588
Query: 206 ctccattcacctactgtttgaccgtcgttcaagtttacgacaacggtcaagtcttcccag 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 ctccattcacctacggtttgaccgtcgttcaagtttacgacaacggtcaagtcttcccag 1648
Query: 266 cttccatcttggatatcactgacgatgaattgatctctcacttcatctctgctgtcaaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 cttccatcttggatatcactgacgatgaattgatctctcacttcatctctgctgtcaaca 1708
Query: 326 ccattgcttgtgtttccttggctgctggttacccaaccttgccatctgtcggtcactctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 ccattgcttgtgtttccttggctgctggttacccaaccttgccatctgtcggtcactctt 1768
Query: 386 tgatcaacaactacaaggacttgttggctgtcgctatcgctgctgactacatctacccag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 tgatcaacaactacaaggacttgttggctgtcgctatcgctgctgactacatctacccag 1828
Query: 446 aaattgaagaattgaaggacagaattgagaacccagatgcttacgcttctgctgccccag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 aaattgaagaattgaaggacagaattgagaacccagatgcttacgcttctgctgccccag 1888
Query: 506 ttgctgctgcttccggctcttccgaagctgctgctgaagaagctccagctgaagaagaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 ttgctgctgcttccggctcttccgaagctgctgctgaagaagctccagctgaagaagaag 1948
Query: 566 aagaatctgatgacgacatgggttttcgtttgttcgattaaacaccttataattatggna 625
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 1949 aagaatctgatgacgacatgggtttcggtttgttcgattaaacaccttataattatggaa 2008
Query: 626 acaataacaattaaatttt-aattcacatatcggtttcagatgatcaatctgtatctata 684
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 acaataacaattaaattttaaattcacatatcggtttcagatgatcaatctgtatctata 2068
Query: 685 agtttagttaaggctttattaatttctatcttaggcgcacaaatttttatcgcattaaat 744
||||||||| || |||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct: 2069 agtttagtt-agtctttattaatttctatcttaagcgcacaaa-tcttatcgcatcaaat 2126
Query: 745 tattcgtgtctttcattggcgacaatttatttggtttttttgcctgtct 793
|| ||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct: 2127 ta-tcgtgtc-ttca-tggcgacaatttatttg--ttttttgcctgtct 2170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8516
Number of Sequences: 1807
Number of extensions: 8516
Number of successful extensions: 266
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)