BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE06RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig301 1328 0.0
>3x_Contig301
Length = 1492
Score = 1328 bits (670), Expect = 0.0
Identities = 806/841 (95%), Gaps = 8/841 (0%)
Strand = Plus / Minus
Query: 50 tttttaaaaactctcttcaaatctactttaactttggaaagcgtttgaccttgtgactta 109
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttttcaaaaactctcttcaaatctactttaactttggaaagcgtttgaccttgtgactta 893
Query: 110 tgaatcgatagtgaccacgccaaaatcaatggtaattgagttcttgagaccaatggaaca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tgaatcgatagtgaccacgccaaaatcaatggtaattgagttcttgagaccaatggaaca 833
Query: 170 tccttttcatcctccatcgcccaagtctctggtcgaacgagaacattcctggcgtcgcca 229
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 832 tccttttcatcctccatcgcccaagtctctggtcgaacgagaacaatcctggcgtcgcca 773
Query: 230 gaaggagtgaagaattgaactaagggcaatttcgctcctcttgccttcttgtgtaaattc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaaggagtgaagaattgaactaagggcaatttcgctcctcttgccttcttgtgtaaattc 713
Query: 290 cgtacaatttctttcttccgttccacattggcctttatacgactactcatggaatctgtc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cgtacaatttctttcttccgttccacattggcctttatacgactactcatggaatctgtc 653
Query: 350 tccgttatgaaaaagtcgaatattgtctcactgagtggagattcaatttgaatgcgctct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tccgttatgaaaaagtcgaatattgtctcactgagtggagattcaatttgaatgcgctct 593
Query: 410 tgttgatctttcatgaaattcttttctagttccatctctttctttttctgtttggactgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgttgatctttcatgaaattcttttctagttccatctctttctttttctgtttggactgt 533
Query: 470 ttagcggtaagttcttcttcttcactccaatattcttctgaatcgggattctcagtgagc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttagcggtaagttcttcttcttcactccaatattcttctgaatcgggattctcagtgagc 473
Query: 530 ttttcaacatcctcgtcattcagaatcttgtttgagttaaaaggtcctttcaaaaaagcg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttttcaacatcctcgtcattcagaatcttgtttgagttaaaaggtcctttcaaaaaagcg 413
Query: 590 aaggtgtccgaatctaggaatgncagaacttttcccaaactcccatttacgagagtggca 649
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaggtgtccgaatctaggaatgcaagaacttttcccaaactcccatttacgagagtggca 353
Query: 650 tcaatgttttttaatatttcataacttgagcaccaactttcaatttcagtttttttgtag 709
||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 352 tcaatgttttt-aatatt-cataacttgagcaccaactttcaattccagtttttttggag 295
Query: 710 ctaagaagttgtctagcaagtttcctttttacttttacgttgggcgataacaccaccatc 769
|||||||||||||||||| |||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 294 ctaagaagttgtctagca-gtttccttcttaactctacgttgt-cgataacaccaccatc 237
Query: 770 cgatgctttattaggtcattggcttaccaaggaagggttttaagtcttggattaattcgc 829
|||||||| || || |||||| || |||| ||||| ||||||||||||| || |||||||
Sbjct: 236 cgatgcttcataag-tcattgtctcacca-ggaagtgttttaagtcttgaat-aattcgc 180
Query: 830 attggctacccttggctttggaaccggataactttgctggaacaatttcgtcttttggta 889
|||| ||||| || || ||| || | ||| || |||||||||||||||||| |||||||
Sbjct: 179 attgtctacctctg-ctctggtactgaatagctctgctggaacaatttcgtcatttggta 121
Query: 890 a 890
|
Sbjct: 120 a 120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8420
Number of Sequences: 1807
Number of extensions: 8420
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)