BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE07RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1602 1118 0.0
>3x_Contig1602
Length = 12694
Score = 1118 bits (564), Expect = 0.0
Identities = 678/707 (95%), Gaps = 7/707 (0%)
Strand = Plus / Plus
Query: 53 atccgtgcaccagttctcaatttctttatggccaaatcgagaccgttaccaccctcctta 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6333 atccgtgcaccagttctcaatttctttatggccaaatcgagaccgttaccaccctcctta 6392
Query: 113 cgaatctgtacagctggtgcatcatatttcagaggagaatctttagcgagtagtagacat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6393 cgaatctgtacagctggtgcatcatatttcagaggagaatctttagcgagtagtagacat 6452
Query: 173 agatgaattggcgggttctgtaacaatggtacgtattgaatagttaattgcgccgtagaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6453 agatgaattggcgggttctgtaacaatggtacgtattgaatagttaattgcgccgtagaa 6512
Query: 233 ttgtcatttccagtgaaccatagtaagttttcaccaggagtcaaagaaataatgcacttg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6513 ttgtcatttccagtgaaccatagtaagttttcaccaggagtcaaagaaataatgcacttg 6572
Query: 293 aatccgtggttgttaacgggaaacgttaagggagggagctgcgaatgatgcacttggaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6573 aatccgtggttgttaacgggaaacgttaagggagggagctgcgaatgatgcacttggaca 6632
Query: 353 gaattggcatttgtatttatatttccgtggacaataagtgcgggtgtatgaacctcttct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6633 gaattggcatttgtatttatatttccgtggacaataagtgcgggtgtatgaacctcttct 6692
Query: 413 ccgttcttgatgttgtaaaattggatttgggacatcacttgattt-atttagggtattct 471
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 6693 ccgttcttgatgttgtaaaattggatttgggacatcacttgatttaattaagggtattct 6752
Query: 472 atggtgtaccagtgggaaaaagaagcaaatttgagtgtcagtcacaggtatttgctgaat 531
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 6753 atggtgtaccagtgggaaaaagaagcagatttgagtgtcagtcacaggtattagctgaat 6812
Query: 532 tacccatgtagaaactttatgatttcgaatactangaacaatggatggattgctcgtatt 591
|||| ||||| ||| ||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct: 6813 taccagtgtag-aaccttatgatatcgaatactaggaacaatggatggattgctcgta-t 6870
Query: 592 ttaaaatcgtttacctttcaagacatcttgtttaaagatctgatccaaaatcttcgcaca 651
|||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6871 ttaaaatcgttttaccttcgagacatcttgtttaaagatctgatccaaaatctacgcaca 6930
Query: 652 ttggtaaataaaattagcagacctcgaaccttcatattacgtgatattgcacagggttat 711
|| ||||||||||| |||||||||||||| ||||||| ||||||||| ||| ||| ||||
Sbjct: 6931 tt-gtaaataaaataagcagacctcgaactttcatatcacgtgatatagca-aggtttat 6988
Query: 712 atctctaaattttccatc-acaaataaagccctgctttaccacaggt 757
||||||||| | |||||| ||||||||||| |||| | |||||||||
Sbjct: 6989 atctctaaa-tatccatcaacaaataaagcactgcataaccacaggt 7034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,848
Number of Sequences: 1807
Number of extensions: 13848
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)