BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE08FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1100 0.0
>3x_Contig1319
Length = 7600
Score = 1100 bits (555), Expect = 0.0
Identities = 615/631 (97%), Gaps = 3/631 (0%)
Strand = Plus / Plus
Query: 86 tttaacttttttaaattttttttgtacccctcggtacctgcatgcctttctgccgcaata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tttaacttttttaaattttttttgtacccctcggtacctgcatgcctttctgccgcaata 4373
Query: 146 tctgcactaaacgacataaaaggaagaagaccgttttttgtggcaagtacgacgaaacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 tctgcactaaacgacataaaaggaagaagaccgttttttgtggcaagtacgacgaaacaa 4433
Query: 206 gtgaaaaggcattatgtaactaagggaactgggtcaattcgtatagtaagtcatgctcta 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gtgaaaaggcattaggtaactaagggaactgggtcaattcgtatagtaagtcatgctcta 4493
Query: 266 gaagatttacgggctgctggaaatgtcaacattctagaacttcgccgcagtcccaaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 gaagatttacgggctgctggaaatgtcaacattctagaacttcgccgcagtcccaaaaaa 4553
Query: 326 aaaaggcgtaatggtaattgaagaagaaaatcttcttggagatcccttgtacgcaggatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4554 aaaaggcgtaatggtaattgaagaagaaaatcttcttggagatcccttgtacgcaggatt 4613
Query: 386 ggacaagaactttaaggaattggagctgcctatttttccttttttttcacctctaagtgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4614 ggacaagaactttaaggaattggagctgcctatttttccttttttttcacctctaagtgg 4673
Query: 446 catggaaatcagtgtactgtgagctatttcattacgtgcaaacggaaagcggtgcccttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4674 catggaaatcagtgtactgtgagctatttcattacgtgcaaacggaaagcggtgcccttt 4733
Query: 506 tcgaatctacgggttaagtccgccccccgcacccctctttctccctcaggcttctttttt 565
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct: 4734 tcgaatctacgggttaagtccgccccccgcacccctctctctccctcaggc-tccttttt 4792
Query: 566 tttagtcgtacgacatgtcaaaacggatacaaaaaatggcaaacgactaatttttctagc 625
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4793 ttgagtcgtacgacatgtcaaaacggatac-aaaaatggcaaacgactaatttttctagc 4851
Query: 626 aaggttatgttttcgcattaatatgtgtaaatatcagttgacagaccttatataagtttt 685
||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 4852 aagaatatgtttccgcattagtatgtgtcaatatcagttgacagaacctatataagtatt 4911
Query: 686 ctgtggccatttcaagatggttttttttttt 716
|||||| ||||||| ||||||||||||||||
Sbjct: 4912 ctgtgg-catttcaggatggttttttttttt 4941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,477
Number of Sequences: 1807
Number of extensions: 15477
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)