BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE08RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 1338 0.0
>3x_Contig532
Length = 2251
Score = 1338 bits (675), Expect = 0.0
Identities = 760/780 (97%), Gaps = 7/780 (0%)
Strand = Plus / Plus
Query: 49 agtttctcctatatcagatatggcagcagcaggaagaggcaggaagagctcgagggtttc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 agtttctcctatatcagatatggcagcagcaggaagaggcaggaagagctcgagggtttc 90
Query: 109 tcgctcagctaacaaagcaaccagctataaaatcgatacagacgagttagacattgaaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tcgctcagctaacaaagcaaccagctataaaatcgatacagacgagttagacattgaaga 150
Query: 169 tgatgaaaaggatcaagagtaccctggaccagccaatgatgatgattactatgatgaccc 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 151 tgatgaaaaggatcaagagtaccctggaccagccaatgatgatgattacgatgatgaccc 210
Query: 229 agatgctgatatcgaaaacgagggtaaaccatctcgttccaagcgcaaggccgcttcgag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agatgctgatatcgaaaacgagggtaaaccatctcgttccaagcgcaaggccgcttcgag 270
Query: 289 cacacctgttccagtggtactagcgacaagaggaaggccttcaaagaggaaaagagaaga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacacctgttccagtggtactagcgacaagaggaaggccttcaaagaggaaaagagaaga 330
Query: 349 agatttgaacgatcccttaagacagaaactaccgtacccagtggacgaaaacgggtctcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agatttgaacgatcccttaagacagaaactaccgtacccagtggacgaaaacgggtctcc 390
Query: 409 atacccaattgtgaatgacgagtattcattacctgaggatccagagggtgaaaccaagat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atacccaattgtgaatgacgagtattcattacctgaggatccagagggtgaaaccaagat 450
Query: 469 caccaagaatggtgatcttctagagggaagacaatttgtagtcagaactttcacggtacc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caccaagaatggtgatcttctagagggaagacaatttgtagtcagaactttcacggtacc 510
Query: 529 ttccagaggtgaagttaaatacatgctntctactgagccagcccgtgccgttgggttcag 588
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 511 ttccagaggtgaagttaaatacatgctttctactgagccagcccgtgccgttgggttcag 570
Query: 589 agactcatacttgttcttccagtaccatccaaacctatacaaattgattatctcgcaatc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agactcatacttgttcttccagtaccatccaaacctatacaaattgattatctcgcaatc 630
Query: 649 agagagagacgatctcatcaaaaatgttgtattgcccctattcgtacagaaaacgnaatc 708
|||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||
Sbjct: 631 agagagagacgatctcatcaaaaatggtgtattg-ccctattcgtacag-aaacagaatc 688
Query: 709 attgcgctagttactgcaaggaagtgtgttccgagaatttcgagcccagggttgttgtan 768
||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||
Sbjct: 689 attgcgctagttactgcaagg-agtgtgttccgagaattcggag-ccaaggttgttgtag 746
Query: 769 attggtaaaaacttcacggttgtattattaccccggtaagcttcgtgtcttccgggaagg 828
| |||||||||| |||||| || |||||||| ||||||||||||||| | ||||||||||
Sbjct: 747 a-tggtaaaaacatcacggatg-attattacgccggtaagcttcgtg-catccgggaagg 803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5839
Number of Sequences: 1807
Number of extensions: 5839
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)