BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE09FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1239 1070 0.0
3x_Contig1608 109 1e-23
>3x_Contig1239
Length = 4094
Score = 1070 bits (540), Expect = 0.0
Identities = 606/621 (97%), Gaps = 7/621 (1%)
Strand = Plus / Plus
Query: 147 aatagtgcttaaaacggaggaggatatcgcaaaatggaaagaagagagaaggaagatgtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 aatagtgcttaaaacggaggaggatatcgcaaaatggaaagaagagagaaggaagatgtg 67
Query: 207 gttaataaagatttcaaataagaaagaaatgtacagagaaaagtttaacgtcaaggacga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gttaataaagatttcaaataagaaagaaatgtacagagaaaagtttaacgtcaaggacga 127
Query: 267 agacttgaatcgtaatcctctccaggagtctagaaaggagcgctattttattcaaaatat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agacttgaatcgtaatcctctccaggagtctagaaaggagcgctattttattcaaaatat 187
Query: 327 acaaaaccaagttaaaaggtttaattataaaccaaacttgacgataggtcttcatcagag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 acaaaaccaagttaaaaggtttaattataaaccaaacttgacgataggtcttcatcagag 247
Query: 387 aatcttaaaagaggaaaacggtaagatcttggatttcatcaaagaacttggtgatgccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aatcttaaaagaggaaaacggtaagatcttggatttcatcaaagaacttggtgatgccaa 307
Query: 447 ttatctcaaatatgaacttacagaagaagaaaaagaggtgctctttggaggcaaagatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttatctcaaatatgaacttacagaagaagaaaaagaggtgctctttggaggcaaagatca 367
Query: 507 caagaatgaccagaatagacgctccaataggaggtatgataggcaactcaatcaacgtga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caagaatgaccagaatagacgctccaataggaggtatgataggcaactcaatcaacgtga 427
Query: 567 tactcaataccgaaaccattcaaggaaaagaccgattgatgagggttgaaaaaggaaatc 626
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 428 tactcaataccgaaaccattcaaggaaaagaccgattgatgaggtttgaaaaaggaaatc 487
Query: 627 ttgcttacttacttaacccttccaatatanagttagtgacagctgaaccaatgaaagttc 686
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 488 ttgcttactactttaacccttccaatataaagttagtgacagctgaaccaatgaaagtt- 546
Query: 687 cctattaagataccaggggaagattttatttcaatgccctttccgttatttatttgtcag 746
||||||||||||||| ||||||| |||| ||||||| ||||||||||||| |||||||
Sbjct: 547 cctattaagatacca-gggaagaattta-ttcaatg-cctttccgttatt--attgtcag 601
Query: 747 cantatcagccgtcatatttt 767
|| |||||| |||||||||||
Sbjct: 602 caatatcag-cgtcatatttt 621
>3x_Contig1608
Length = 13037
Score = 109 bits (55), Expect = 1e-23
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 97 gatatcatagaaaccgtcaaaggatcagatctgtatatacctggaacttcaa-tagtgct 155
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 79 gatatcatagaaacggtcaaaggatcggatctgtatatacctggaacttcaactagtgct 20
Query: 156 taaaacggaggaggatatc 174
|||||||| || |||||||
Sbjct: 19 taaaacggggggggatatc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8259
Number of Sequences: 1807
Number of extensions: 8259
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)