BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZE09RM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1042                                                        1176   0.0  

>3x_Contig1042 
          Length = 3616

 Score = 1176 bits (593), Expect = 0.0
 Identities = 707/739 (95%), Gaps = 6/739 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   ctatcgataataatatagggtttaagttctcacagcaaggtaatataacacctagtgggt 107
            |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 305  ctatcgataataatatagg--ttaagttctcacagcaaggtaatataacacctagtgggt 362

                                                                        
Query: 108  gtttgcattcattaaaacctatgtggaaaattgaaaagcagcccgcacatctacaaagca 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363  gtttgcattcattaaaacctatgtggaaaattgaaaagcagcccgcacatctacaaagca 422

                                                                        
Query: 168  gtattggaacatggaaaagtgattcgaaatatcaaacaaagaaaccattaacaactggta 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423  gtattggaacatggaaaagtgattcgaaatatcaaacaaagaaaccattaacaactggta 482

                                                                        
Query: 228  ttctccactggcaagtctgttgataattccaaacattcacgtgacttgtgtacttctcct 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  ttctccactggcaagtctgttgataattccaaacattcacgtgacttgtgtacttctcct 542

                                                                        
Query: 288  tccctttttttttttgcagattttccgctggaatttcaacggtccaaatgataggtgaaa 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  tccctttttttttttgcagattttccgctggaatttcaacggtccaaatgataggtgaaa 602

                                                                        
Query: 348  gacatctgatgccaatatctgcgatgagaaagggaccagattcctgtgctactgactctt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  gacatctgatgccaatatctgcgatgagaaagggaccagattcctgtgctactgactctt 662

                                                                        
Query: 408  ttttttttgagctgtgccagttgattgcccatcggacagcttcatataaagagagtcttt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  ttttttttgagctgtgccagttgattgcccatcggacagcttcatataaagagagtcttt 722

                                                                        
Query: 468  tcaactgtttcaagcgtttatctagcttccagctctgncttggattgttctattcagtac 527
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| 
Sbjct: 723  tcaactgtttcaagcgtttatctagcttccagctctgtcttgtattgttctattcagta- 781

                                                                        
Query: 528  cttttctttattgcccaaatatacaagctcacgccatgtgaattgacgatgtcaagtaat 587
            |||||||||| ||||||||||||| |||||||| || |||||| ||||||||||||||||
Sbjct: 782  cttttctttagtgcccaaatatacgagctcacg-caggtgaatcgacgatgtcaagtaat 840

                                                                        
Query: 588  aagccggttgtagatccattccattccttcctagcaggatcaattgcaggtgctatagaa 647
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 841  aagccggctgtagatccattccattccttcctagcaggatcaatcgcaggtgctatagaa 900

                                                                        
Query: 648  gccttcatcacttatcctttcgagtttgccaaaacaaggttacaagtggggggataaggg 707
            |||| |||||||||||||||||||||||||||||| ||||||| ||| || |||||||| 
Sbjct: 901  gcctccatcacttatcctttcgagtttgccaaaacgaggttac-agttggtggataaggc 959

                                                                        
Query: 708  ttataaagcttccaaaaatcccattggttcttatttccataacgggtaaaaactacggaa 767
            |  ||||||||||| |||| ||||||||||| || | ||  |||||||| |||||||| |
Sbjct: 960  tagtaaagcttccagaaat-ccattggttctaatatacaatacgggtaagaactacggta 1018

                               
Query: 768  tttaattcttttacgtcgg 786
            ||| || | ||||||||||
Sbjct: 1019 tttcatccatttacgtcgg 1037


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,408
Number of Sequences: 1807
Number of extensions: 14408
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)