BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZE09RM1.SCF screened BAC_end (919 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1042 1176 0.0 >3x_Contig1042 Length = 3616 Score = 1176 bits (593), Expect = 0.0 Identities = 707/739 (95%), Gaps = 6/739 (0%) Strand = Plus / Plus Query: 48 ctatcgataataatatagggtttaagttctcacagcaaggtaatataacacctagtgggt 107 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 305 ctatcgataataatatagg--ttaagttctcacagcaaggtaatataacacctagtgggt 362 Query: 108 gtttgcattcattaaaacctatgtggaaaattgaaaagcagcccgcacatctacaaagca 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 gtttgcattcattaaaacctatgtggaaaattgaaaagcagcccgcacatctacaaagca 422 Query: 168 gtattggaacatggaaaagtgattcgaaatatcaaacaaagaaaccattaacaactggta 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gtattggaacatggaaaagtgattcgaaatatcaaacaaagaaaccattaacaactggta 482 Query: 228 ttctccactggcaagtctgttgataattccaaacattcacgtgacttgtgtacttctcct 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ttctccactggcaagtctgttgataattccaaacattcacgtgacttgtgtacttctcct 542 Query: 288 tccctttttttttttgcagattttccgctggaatttcaacggtccaaatgataggtgaaa 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 tccctttttttttttgcagattttccgctggaatttcaacggtccaaatgataggtgaaa 602 Query: 348 gacatctgatgccaatatctgcgatgagaaagggaccagattcctgtgctactgactctt 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 gacatctgatgccaatatctgcgatgagaaagggaccagattcctgtgctactgactctt 662 Query: 408 ttttttttgagctgtgccagttgattgcccatcggacagcttcatataaagagagtcttt 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 663 ttttttttgagctgtgccagttgattgcccatcggacagcttcatataaagagagtcttt 722 Query: 468 tcaactgtttcaagcgtttatctagcttccagctctgncttggattgttctattcagtac 527 ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 723 tcaactgtttcaagcgtttatctagcttccagctctgtcttgtattgttctattcagta- 781 Query: 528 cttttctttattgcccaaatatacaagctcacgccatgtgaattgacgatgtcaagtaat 587 |||||||||| ||||||||||||| |||||||| || |||||| |||||||||||||||| Sbjct: 782 cttttctttagtgcccaaatatacgagctcacg-caggtgaatcgacgatgtcaagtaat 840 Query: 588 aagccggttgtagatccattccattccttcctagcaggatcaattgcaggtgctatagaa 647 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 841 aagccggctgtagatccattccattccttcctagcaggatcaatcgcaggtgctatagaa 900 Query: 648 gccttcatcacttatcctttcgagtttgccaaaacaaggttacaagtggggggataaggg 707 |||| |||||||||||||||||||||||||||||| ||||||| ||| || |||||||| Sbjct: 901 gcctccatcacttatcctttcgagtttgccaaaacgaggttac-agttggtggataaggc 959 Query: 708 ttataaagcttccaaaaatcccattggttcttatttccataacgggtaaaaactacggaa 767 | ||||||||||| |||| ||||||||||| || | || |||||||| |||||||| | Sbjct: 960 tagtaaagcttccagaaat-ccattggttctaatatacaatacgggtaagaactacggta 1018 Query: 768 tttaattcttttacgtcgg 786 ||| || | |||||||||| Sbjct: 1019 tttcatccatttacgtcgg 1037 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,408 Number of Sequences: 1807 Number of extensions: 14408 Number of successful extensions: 88 Number of sequences better than 1.0e-20: 1 length of query: 919 length of database: 10,358,551 effective HSP length: 16 effective length of query: 903 effective length of database: 10,329,639 effective search space: 9327664017 effective search space used: 9327664017 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)