BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZE10FM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1384                                                        1235   0.0  

>3x_Contig1384 
          Length = 9372

 Score = 1235 bits (623), Expect = 0.0
 Identities = 684/702 (97%), Gaps = 2/702 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tccttctaggaatagccttcttctcttgcgtttccccactcgagaggcatttttattgct 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 tccttctaggaatagccttcttctcttgcgtttccccactcgagaggcatttttattgct 8134

                                                                        
Query: 146  cgcttacgtttatccttcctgcacctttaaattccgatatggaattttttcgtaatgtcc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8135 cgcttacgtttatccttcctgcacctttaaattccgatatggaattttttcgtaatgtcc 8194

                                                                        
Query: 206  aaaattgcaaccattttaaaggtaaaaaagatcaatgaaggatgaagaatgaaaagaatc 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8195 aaaattgcaaccattttaaaggtaaaaaagatcaatgaaggatgaagaatgaaaagaatc 8254

                                                                        
Query: 266  aacaactcggtctcttcattcttactgttactatacactactcctagattctgatagtgg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 aacaactcggtctcttcattcttactgttactatacactactcctagattctgatagtgg 8314

                                                                        
Query: 326  tagcatcaatggtgaagtaccagtaactaaagatgagggatccaacagagttacaacctg 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 tagcatcaatggtgaagtaccagtaactaaagatgagggatccaacagagttacaacctg 8374

                                                                        
Query: 386  tgcattcattgccatctttacgatccggtactaaatcaatagcaagcgatgaggcatctg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 tgcattcattgccatctttacgatccggtactaaatcaatagcaagcgatgaggcatctg 8434

                                                                        
Query: 446  agcctaaacaattacattcagatagcaggattaactgtggtgatgtcgctgatcctgata 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 agcctaaacaattacattcagatagcaggattaactgtggtgatgtcgctgatcctgata 8494

                                                                        
Query: 506  tacagtatattggacctaatacangaaaggtagagtccttgagtcagaaaatttcaaaga 565
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 8495 tacagtatattggacctaatacagaaaaggtagagtccttgagtcagaaaatttcaaaga 8554

                                                                        
Query: 566  taagcagtctccgagataagtcccttgttgttcccagatcagaaagaagaagattgcttg 625
            |||||||||||||||||||||||||||||||||||| |||| ||| || |  ||| ||| 
Sbjct: 8555 taagcagtctccgagataagtcccttgttgttcccatatcataaataatagtatttcttt 8614

                                                                        
Query: 626  cgaacctagcgataatcccggaatataaagactctagagagtatccacgacactttgaag 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8615 cgaacctagcgataatcccggaatataaagactctagagagtatccacgacac-ttgaag 8673

                                                                        
Query: 686  tcatttatcgtacttatcattgcatatggagctgtcatgggtcccatggggactttttat 745
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  |
Sbjct: 8674 tcatttatcgtacttatcattgcatatggagctgtcatgggtcccatgggaacttctatt 8733

                                                      
Query: 746  tttttccctgcaattggtccttttagtagcggatttccatac 787
             ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 8734 attttccctgcaattggtcc-tttagtagcggatttcgatac 8774


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6871
Number of Sequences: 1807
Number of extensions: 6871
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)