BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE10RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1034 1239 0.0
>3x_Contig1034
Length = 3729
Score = 1239 bits (625), Expect = 0.0
Identities = 714/735 (97%), Gaps = 7/735 (0%)
Strand = Plus / Plus
Query: 48 ccgataagatcacgaggcacaaatgataatgtgccgagcaggaactgacactactttagt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 ccgataagatcacgaggcacaaatgataatgtgccgagcaggaactgacactactttagt 1859
Query: 108 acactgtttaacccagttatttgtaatcccgttcggtaaatcggtgatatatatttctct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 acactgtttaacccagttatttgtaatcccgttcggtaaatcggtgatatatatttctct 1919
Query: 168 ttcactccagtcgaagtcccttctcagtagaagcctttgaggcaaaaagaaaagagagaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 ttcactccagtcgaagtcccttctcagtagaagcctttgaggcaaaaagaaaagagagaa 1979
Query: 228 gcctttgagagtgaaatcatcatactgcgcttcggaaaaaagtgtcatcaataatgaacc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 gcctttgagagtgaaatcatcatactgcgcttcggaaaaaagtgtcatcaataatgaacc 2039
Query: 288 agagcaggaaatgctgtgcattatatgtggagcttccacggtggaaaataattgtggtga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 agagcaggaaatgctgtgcattatatgtggagcttccacggtggaaaataattgtggtga 2099
Query: 348 gtcaagggttgtttgtgcttttattttgtacggcactgcactatttttgaaagattattg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 gtcaagggttgtttgtgcttttattttgtacggcactgcactatttttgaaagattattg 2159
Query: 408 tgcttaatatcagtacttaacacatcagtctgtttccatttgattaagaaagaaaaacta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 tgcttaatatcagtacttaacacatcagtctgtttccatttgattaagaaagaaaaacta 2219
Query: 468 accagctgtgttgatagctagcagtttggccactggtgtataaaacctttgaagtgtatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 accagctgtgttgatagctagcagtttggccactggtgtataaaacctttgaagtgtatt 2279
Query: 528 ca-tgccttagctctctccatttgcctatttgagc-aggagtcaaacttaagggtgatta 585
|| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct: 2280 cattgccttagctctctccatttgcctatttgagcaaggagtcaaactcaagggtgataa 2339
Query: 586 tcatcggattaatcgttagattgagttattaaataagatggttttcaaagttctttggat 645
|||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct: 2340 tcatcggattaatcgttagattgagttattaataaagatgg-tttcgaagttctttggat 2398
Query: 646 tccgtaagagcagcaagaaatcatctagcgggtcggaacaat-acacgcagacattt-ca 703
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 2399 tcggtaagagcagcaagaaatcatctagcgggtcggaacaatcacacgcagacatttcca 2458
Query: 704 cccggncggcttcttcttctcctnttccttc-tcttctttgggcagctgaagctttagat 762
|||| || ||||||||||| || | |||| |||||||| |||||||||||||||||||
Sbjct: 2459 cccgttcgtcttcttcttcttcttcttcttcttcttcttt-ggcagctgaagctttagat 2517
Query: 763 cagaatgaaaattta 777
||||||||| |||||
Sbjct: 2518 cagaatgaagattta 2532
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7692
Number of Sequences: 1807
Number of extensions: 7692
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)