BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE11FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1170 0.0
>3x_Contig1784
Length = 28126
Score = 1170 bits (590), Expect = 0.0
Identities = 642/658 (97%), Gaps = 1/658 (0%)
Strand = Plus / Minus
Query: 88 tcgaaaacgctatgacatatgtcattgctaccggtggttccactaacgctgttcttcata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24028 tcgaaaacgctatgacatatgtcattgctaccggtggttccactaacgctgttcttcata 23969
Query: 148 tggttgctgtcgctcactctgccggtgtcaagattactccagatgatttccaaagaatta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23968 tggttgctgtcgctcactctgccggtgtcaagattactccagatgatttccaaagaatta 23909
Query: 208 gtgacaagatttttttgttgggtgatttcaaaccttctggtaaatatgtgatggcagatt 267
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23908 gtgacaagactccattgttgggtgatttcaaaccttctggtaaatatgtgatggcagatt 23849
Query: 268 tgattaccgtcggtggtacccaagctgttatcaaatacttgtacgaagaaggcttcctac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23848 tgattaccgtcggtggtacccaagctgttatcaaatacttgtacgaagaaggcttcctac 23789
Query: 328 atggtaacactattaccatctccggtgacactttagcagaaagagcagctaaggctgtat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23788 atggtaacactattaccatctccggtgacactttagcagaaagagcagctaaggctgtat 23729
Query: 388 ctttgaaggatggtcaagacatcattcgtcctctaactaacccaattaagacaagtggtc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23728 ctttgaaggatggtcaagacatcattcgtcctctaactaacccaattaagacaagtggtc 23669
Query: 448 atttacaaattctatacggaagtttggccccaggtgggtcagtcggaaaaattactggta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23668 atttacaaattctatacggaagtttggccccaggtgggtcagtcggaaaaattactggta 23609
Query: 508 aagaaggtacttacttcaagggtaaggctagagtattcaacgacgaaccaggctttattt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23608 aagaaggtacttacttcaagggtaaggctagagtattcaacgacgaaccaggctttattt 23549
Query: 568 ctgctttagaaaacggtgaaatcaagaagggtgaaaaaaccgttgtcattatcagatacg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23548 ctgctttagaaaacggtgaaatcaagaagggtgaaaaaaccgttgtcattatcagatacg 23489
Query: 628 aagggccaagaggtggtccaggtatgcctgaaatgttaaagcccatttctgcattgatgg 687
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 23488 aagggccaagaggtggtccaggtatgcctgaaatgttaaagccatcttctgcattgatgg 23429
Query: 688 gttaccggctagggtaagatgttgctttatttgactgacggtagattttcccgtggtt 745
||||| | ||||| | ||||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 23428 gttacggtctaggtaaggatgttgctcta-ttgactgacggtagattctccggtggtt 23372
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6442
Number of Sequences: 1807
Number of extensions: 6442
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)