BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE11RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig691 1322 0.0
>3x_Contig691
Length = 2698
Score = 1322 bits (667), Expect = 0.0
Identities = 747/766 (97%), Gaps = 7/766 (0%)
Strand = Plus / Minus
Query: 51 cgttatcctgatagtttctcaaagtggaggaaacgttcatcaagaccaagattgggttac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 cgttatcctgatagtttctcaaagtggaggaaacgttcatcaagaccaagattgggttac 903
Query: 111 ctgtggaattcacaccctcacataaatcagaagatacatagtattctgggaaagtcaccg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ctgtggaattcacaccctcacataaatcagaagatacatagtattctgggaaagtcaccg 843
Query: 171 gagtctttccatccttcaaagtagaaacatgaaccaagtcaccatacttaacaacacctc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gagtctttccatccttcaaagtagaaacatgaaccaagtcaccatacttaacaacacctc 783
Query: 231 tagcaacctcagcagcgtattcacgagttaggttgaactctttctccttatgagaggact 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tagcaacctcagcagcgtattcacgagttaggttgaactctttctccttatgagaggact 723
Query: 291 ctctcaatttcttatcgcacccttcgcgtgcagaaacggaatctaaagctaaagccaaag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctctcaatttcttatcgcacccttcgcgtgcagaaacggaatctaaagctaaagccaaag 663
Query: 351 ataacaacaaagtactacacttcatgactgaattattaatggctcaataactgatgtcgt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ataacaacaaagtactacacttcatgactgaattattaatggctcaataactgatgtcgt 603
Query: 411 tatttggataaacaatctctccgcaagttgtaacccctaagctcatcgctattcaatctt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tatttggataaacaatctctccgcaagttgtaacccctaagctcatcgctattcaatctt 543
Query: 471 gatagaaggttccttaaacctgtcgttgcctatatataaaataaacggtacaaaatttat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gatagaaggttccttaaacctgtcgttgcctatatataaaataaacggtacaaaatttat 483
Query: 531 aatgcggtaaattacataatgcaaactaaggtaaggaaggtgctcagcctcaaacttccg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatgcggtaaattacataatgcaaactaaggtaaggaaggtgctcagcctcaaacttccg 423
Query: 591 aaaaagtagtttgtttaccagaagataacattttttgcagttcacccaagcctttgcatt 650
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 422 aaaaagtagtttgtttaccagaagaaaaca-tttttgcagttcacccaagcctttgcatt 364
Query: 651 gagattggtttcgacgaaccatccgcctagatcttggatctaaatttaatcgcagagaca 710
|||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 363 gagattggttcggacgaaccatccgcctagatctcggatctaagtttaatcgcagagaca 304
Query: 711 tcgccgcataaccacatcgcttcaaccaggtgtgttttttcttttgttcctattttgaac 770
||||||||||||||||||||| || ||||||||| |||||||||||||| || | ||| |
Sbjct: 303 tcgccgcataaccacatcgctccagccaggtgtg-tttttcttttgttctta-tatgagc 246
Query: 771 cggttcctttggttggaaaagccagtcttgaacgcagggccaacgc 816
||| ||||||| | |||||||||||| |||||||||| |||||||
Sbjct: 245 cgg-tcctttgct--gaaaagccagtc-tgaacgcaggcccaacgc 204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6367
Number of Sequences: 1807
Number of extensions: 6367
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)