BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZE12FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1231 0.0
>3x_Contig826
Length = 2477
Score = 1231 bits (621), Expect = 0.0
Identities = 653/660 (98%), Gaps = 3/660 (0%)
Strand = Plus / Minus
Query: 86 cggtctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cggtctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacaca 870
Query: 146 ttctactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ttctactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggctt 810
Query: 206 gacgtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gacgtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaa 750
Query: 266 acaacgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acaacgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaat 690
Query: 326 aacctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aacctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaac 630
Query: 386 agggtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agggtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtga 570
Query: 446 aaaacgaaccaaaactgtggcaaacaccagggagaagtagtaacttctatttgatatgat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaacgaaccaaaactgtggcaaacaccagggagaagtagtaacttctatttgatatgat 510
Query: 506 gtaatatgatctatatatatatatccatatatatttatattcatatttacataattatat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtaatatgatctatatatatatatccatatatatttatattcatatttacataattatat 450
Query: 566 acatatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaacan 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acatatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaacaa 390
Query: 626 agcagagcatacccagggccagaaactcatctggaaaa-cccatatacacagcacagaac 684
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 389 agcagagcatacccagggccagaaactcatctggaaaaccccatatacacagcacagaac 330
Query: 685 catgcacatgaaccgaaaggaaaaacagattacangaatggaccgaggaggtcaaaaagg 744
||||||||||||||||||||||||||||| |||| ||||||| ||| || ||||||||||
Sbjct: 329 catgcacatgaaccgaaaggaaaaacagaataca-gaatggaacga-gaagtcaaaaagg 272
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,431
Number of Sequences: 1807
Number of extensions: 10431
Number of successful extensions: 382
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)