BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZE12RM1.SCF screened BAC_end
         (836 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1704                                                         698   0.0  

>3x_Contig1704 
          Length = 14855

 Score =  698 bits (352), Expect = 0.0
 Identities = 432/451 (95%), Gaps = 6/451 (1%)
 Strand = Plus / Plus

                                                                        
Query: 62   aacatgagt-ccaaaacaaggctggaaagccaacttgggcagaatttcaggttacgagat 120
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8530 aacatgagtaccaaaacaaggctggaaagccaacttgggcagaatttcaggttacgagat 8589

                                                                        
Query: 121  cacccaagatcattgtcattactatatgaaaaagctttctctgatatgggaacagagata 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8590 cacccaagatcattgtcattactatatgaaaaagctttctctgatatgggaacagagata 8649

                                                                        
Query: 181  tatgattcttttatacccgatt-tattgctactgaatccgttgaaatgtcagaatgtaat 239
            ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 8650 tatgattcttttatacccgaaactattgctactgaatccgttgaaatgtcagaatgtaat 8709

                                                                        
Query: 240  atgaatttggcaactattcattcagagtttgggaaaaaatggtctcatctctcattcaat 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8710 atgaatttggcaactattcattcagagtttgggaaaaaatggtctcatctctcattcaat 8769

                                                                        
Query: 300  gtggtagagattgacatttgccagctcactggtgatctattaattactagattcgataca 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8770 gtggtagagattgacatttgccagctcactggtgatctattaattactagattcgataca 8829

                                                                        
Query: 360  gtacgcaacaaacaccttcatttacgtttaccttttgatcgtcataatnccagagacctt 419
            |||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||| |
Sbjct: 8830 gtacgcaacaaacaccttcatttacgtttacctttgaatcgtcataattccagagacc-t 8888

                                                                        
Query: 420  ttcggaagaagtcttgggtttttgaagccggccctcgatgagttaaaccattttattttt 479
            ||||||||| |||||||| |||||||||| ||||||||||||||||||||| | | ||| 
Sbjct: 8889 ttcggaagaggtcttggg-ttttgaagcc-gccctcgatgagttaaaccatatca-tttc 8945

                                           
Query: 480  ttccaacaattgtcccctttcaattggagtt 510
            ||||||||||||| ||  |||||||| ||||
Sbjct: 8946 ttccaacaattgtaccacttcaattgaagtt 8976


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,283
Number of Sequences: 1807
Number of extensions: 30283
Number of successful extensions: 766
Number of sequences better than 1.0e-20: 1
length of query: 836
length of database: 10,358,551
effective HSP length: 16
effective length of query: 820
effective length of database: 10,329,639
effective search space: 8470303980
effective search space used: 8470303980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)