BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZE12RM1.SCF screened BAC_end (836 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1704 698 0.0 >3x_Contig1704 Length = 14855 Score = 698 bits (352), Expect = 0.0 Identities = 432/451 (95%), Gaps = 6/451 (1%) Strand = Plus / Plus Query: 62 aacatgagt-ccaaaacaaggctggaaagccaacttgggcagaatttcaggttacgagat 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8530 aacatgagtaccaaaacaaggctggaaagccaacttgggcagaatttcaggttacgagat 8589 Query: 121 cacccaagatcattgtcattactatatgaaaaagctttctctgatatgggaacagagata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8590 cacccaagatcattgtcattactatatgaaaaagctttctctgatatgggaacagagata 8649 Query: 181 tatgattcttttatacccgatt-tattgctactgaatccgttgaaatgtcagaatgtaat 239 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 8650 tatgattcttttatacccgaaactattgctactgaatccgttgaaatgtcagaatgtaat 8709 Query: 240 atgaatttggcaactattcattcagagtttgggaaaaaatggtctcatctctcattcaat 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8710 atgaatttggcaactattcattcagagtttgggaaaaaatggtctcatctctcattcaat 8769 Query: 300 gtggtagagattgacatttgccagctcactggtgatctattaattactagattcgataca 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8770 gtggtagagattgacatttgccagctcactggtgatctattaattactagattcgataca 8829 Query: 360 gtacgcaacaaacaccttcatttacgtttaccttttgatcgtcataatnccagagacctt 419 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | Sbjct: 8830 gtacgcaacaaacaccttcatttacgtttacctttgaatcgtcataattccagagacc-t 8888 Query: 420 ttcggaagaagtcttgggtttttgaagccggccctcgatgagttaaaccattttattttt 479 ||||||||| |||||||| |||||||||| ||||||||||||||||||||| | | ||| Sbjct: 8889 ttcggaagaggtcttggg-ttttgaagcc-gccctcgatgagttaaaccatatca-tttc 8945 Query: 480 ttccaacaattgtcccctttcaattggagtt 510 ||||||||||||| || |||||||| |||| Sbjct: 8946 ttccaacaattgtaccacttcaattgaagtt 8976 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 30,283 Number of Sequences: 1807 Number of extensions: 30283 Number of successful extensions: 766 Number of sequences better than 1.0e-20: 1 length of query: 836 length of database: 10,358,551 effective HSP length: 16 effective length of query: 820 effective length of database: 10,329,639 effective search space: 8470303980 effective search space used: 8470303980 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)