BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZF01FM1.SCF screened BAC_end
         (877 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1617                                                        1205   0.0  

>3x_Contig1617 
          Length = 15119

 Score = 1205 bits (608), Expect = 0.0
 Identities = 725/755 (96%), Gaps = 7/755 (0%)
 Strand = Plus / Plus

                                                                       
Query: 89  gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34  gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 93

                                                                       
Query: 149 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 153

                                                                       
Query: 209 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 213

                                                                       
Query: 269 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 273

                                                                       
Query: 329 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 333

                                                                       
Query: 389 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 393

                                                                       
Query: 449 tctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactgttttctt 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactgttttctt 453

                                                                       
Query: 509 cagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaattggtnt 568
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 454 cagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaatttggtt 513

                                                                       
Query: 569 ctagtggtttcctgtcgaaatcacgttcttccaattctggttcaccccattcatcgtcct 628
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 514 ctagtggtttcttgtcgaaatcacgttcttccaactctggttcaccccattcatcgtcct 573

                                                                       
Query: 629 tcttacctctgctcttctcagtctttgggggagaaaccggatcttcttga-gggaaccat 687
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct: 574 tcttacctctgctcttctcagtctttgggggagaaa-cggatcttcttgatgggaacgat 632

                                                                       
Query: 688 ggtgtaggtttcttttgctcagattgtctgaatg-aaccctgactggtttctttggctgt 746
           |||||||||| ||||||||||||||||||| ||| ||| |||||||||||| ||||||||
Sbjct: 633 ggtgtaggttccttttgctcagattgtctggatgaaacactgactggtttc-ttggctgt 691

                                                                       
Query: 747 ctgggcaaca-aggaaatggttttctttgaggccggggtttgttgttaatttgaa-aacg 804
           || |||| || ||||||| |  ||||| |||||||| |||||||||| | ||||| ||||
Sbjct: 692 cttggcagcagaggaaattggcttcttggaggccggtgtttgttgttgaattgaataacg 751

                                              
Query: 805 ggcccca-cggagtgcctgttttttattaacaatt 838
           ||| ||| ||||||  ||| |||| ||||||||||
Sbjct: 752 ggcaccagcggagttgctgattttcattaacaatt 786


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8387
Number of Sequences: 1807
Number of extensions: 8387
Number of successful extensions: 158
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)