BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF01RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig604 1195 0.0
>3x_Contig604
Length = 2699
Score = 1195 bits (603), Expect = 0.0
Identities = 638/646 (98%), Gaps = 3/646 (0%)
Strand = Plus / Plus
Query: 50 ttcaaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 ttcaaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttg 1475
Query: 110 gcatcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgtttta 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 gcatcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgtttta 1535
Query: 170 gaaacatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gaaacatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgc 1595
Query: 230 agggtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccaga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 agggtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccaga 1655
Query: 290 tcatcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 tcatcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatg 1715
Query: 350 gatccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcatt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1716 gatccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcatt 1775
Query: 410 ggtcggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgata 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 ggtcggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgata 1835
Query: 470 ctcatcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 ctcatcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatt 1895
Query: 530 tcactagataaacgcttgtacaaaaaacaatttgtcaaagaaaacgatttatttctaatg 589
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 1896 tcactagataaacgcttgtacaaaaaacaatttgtcaaagaaaacga-ttaattctaatg 1954
Query: 590 attagcanagctgatttgtag-acagttttagactctctttcagtgtacgtatttattga 648
||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct: 1955 attagcaaagctga-ttgtagaacagttttagactctcttcaagtgtacgtatttatgga 2013
Query: 649 tttcctttgtgttacaaaacatgtgtactaaatttcatacgctttt 694
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 tttcctttgtgttacaaaacatgtgtactaaatttcatacgctttt 2059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7442
Number of Sequences: 1807
Number of extensions: 7442
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)