BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF02FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1392 1380 0.0
>3x_Contig1392
Length = 9092
Score = 1380 bits (696), Expect = 0.0
Identities = 823/851 (96%), Gaps = 12/851 (1%)
Strand = Plus / Plus
Query: 90 tgattattattttttggttttgcaagcttccctgaaaaaactataatactctcgaactta 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4185 tgattattattttttggttttgcaagcttccctgaaaaaactataatactctcgaactta 4244
Query: 150 attctgtgctgcaagtcaatataccaaacaagcacttcacgtagtaatcaattagataat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4245 attctgtgctgcaagtcaatataccaaacaagcacttcacgtagtaatcaattagataat 4304
Query: 210 tggatgaacttgagatgataacagattgtaaacaaatttaacaatgtcaacttttgtttt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4305 tggatgaacttgagatgataacagattgtaaacaaatttaacaatgtcaacttttgtttt 4364
Query: 270 taaatgcctggtattacacttttttgtcctccttgaactctagatctgaattatgtataa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4365 taaatgcctggtattacacttttttgtcctccttgaactctagatctgaattatgtataa 4424
Query: 330 taatatatactaaaaaaatactcatcgctatttcattcactatgcaaaaaaatgatatgg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4425 taatatatactaaaaaaatactcatcgctatttcattcactatgcaaaaaaatgatatgg 4484
Query: 390 ctcgccaaattggcacattttttgatgctttatatataaaactacgaatcaaactaagaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4485 ctcgccaaattggcacattttttgatgctttatatataaaactacgaatcaaactaagaa 4544
Query: 450 gaaaagttgaaaataaaaaaaaaaaaattaaaacaacaacacacatcgcacacatcgcat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4545 gaaaagttgaaaataaaaaaaaaaaaattaaaacaacaacacacatcgcacacatcgcat 4604
Query: 510 cacctatgcaaacaagggacaataagggaattctgattggaaaatatatatatatagatg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4605 cacctatgcaaacaagggacaataagggaattctgattggaaaatatatatatatagatg 4664
Query: 570 tatattcaaattagcaacaggacagagacatataagtgttgaccttggttgttaggcagg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4665 tatattcaaattagcaacaggacagagacatataagtgttgaccttggttgttaggcagg 4724
Query: 630 agctctttccttacttgacgtaaattctttatgttgggttaatcacccagctttctctca 689
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 4725 agctctttccttacttgacgtaaattctttatgttgtgttaatcacccagcttcctctca 4784
Query: 690 tcacagtagaaatgctaactagtgtttgttaggagatattgagtgtataacttgaaagca 749
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4785 tcacagtagaaatgctaactagtgtttgttaggagatatgaagtgtataacttgaaagca 4844
Query: 750 ggaagggccatgtttgggagtttgtaaaattagattgccaaagctggagttaacgaactc 809
|||| ||| |||||| |||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 4845 ggaa-ggcaatgttt-ggaggttgtaaaataagattgcaaaagct-gagttaacgaactc 4901
Query: 810 agctcagtgggatgtatcctgaagaaaagcccttaatttggggacaactgccttatatgc 869
|||||||| |||||||||||||||||||| |||||| |||||||| |||| | |||||||
Sbjct: 4902 agctcagt-ggatgtatcctgaagaaaag-ccttaaattggggaccactggc-tatatgc 4958
Query: 870 ttcaaaattacgtgaaacaatttatgctaactttctttattacccggccctttgtttttt 929
|| |||| ||||| |||||| ||||||||||| |||||||||||| | |||||||||
Sbjct: 4959 -tccaaatcacgtg-aacaatatatgctaactt--cttattacccggcac-ttgtttttt 5013
Query: 930 ggtaagtaaat 940
||||||||||
Sbjct: 5014 -gtaagtaaat 5023
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,141
Number of Sequences: 1807
Number of extensions: 19141
Number of successful extensions: 595
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)