BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1409 0.0
>3x_Contig1751
Length = 24682
Score = 1409 bits (711), Expect = 0.0
Identities = 815/842 (96%), Gaps = 6/842 (0%)
Strand = Plus / Plus
Query: 48 cttgacagcaatagctttgagagccatatagtattgtttcaacatatttaagtcagcttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15061 cttgacagcaatagctttgagagccatatagtattgtttcaacatatttaagtcagcttg 15120
Query: 108 gcaaacgtccagatggaataaaacatccctatatttgtcaagttgggttaaatcagcctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15121 gcaaacgtccagatggaataaaacatccctatatttgtcaagttgggttaaatcagcctc 15180
Query: 168 taccgatgccgctgtttggtaaaaagtgttgtttattacaacggtaaacgcatctttcaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15181 taccgatgccgctgtttggtaaaaagtgttgtttattacaacggtaaacgcatctttcaa 15240
Query: 228 attaatttgaagggcgcgcttaaacggtatagcaaatatatcattcattatggtcttaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15241 attaatttgaagggcgcgcttaaacggtatagcaaatatatcattcattatggtcttaga 15300
Query: 288 ctaaccttttggcgaaatgttttctcaaccagagattttgggcttgctatcatactattg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15301 ctaaccttttggcgaaatgttttctcaaccagagattttgggcttgctatcatactattg 15360
Query: 348 ttgataaatgcatttactttttcattttttaaatgtctataccttaaaatacatataata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15361 ttgataaatgcatttactttttcattttttaaatgtctataccttaaaatacatataata 15420
Query: 408 cattagaccataaataacctacctctggtagaagatgagacctctatatcttcatgagca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15421 cattagaccataaataacctacctctggtagaagatgagacctctatatcttcatgagca 15480
Query: 468 tctctgaaatcatcaccatgttcctctgcattttctactgacggtattaatgtcctggaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15481 tctctgaaatcatcaccatgttcctctgcattttctactgacggtattaatgtcctggaa 15540
Query: 528 ttcgtgctactgatggtattcattcttaaggaataagatcttgcaagatcttgtttttcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15541 ttcgtgctactgatggtattcattcttaaggaataagatcttgcaagatcttgtttttcc 15600
Query: 588 attccaataatgtcttcttcatctgggtcggcaatttttatttcatcgccatcgttcttt 647
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15601 attccaataatgtcttcttcatctgggtcggcaattttaatttcatcgccatcgttcttt 15660
Query: 648 aattcatctaatangaatgttatgtttgtgacttttga-ttcaccgattgtg-accacgt 705
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 15661 aattcatctaataggaatgttatgtttgtgacttttgatttcaccgattgtgaaccacgt 15720
Query: 706 tacgtttttggaatacttttatcttttttagaaga-accaaatttttcaagttttttacg 764
||||||||| | |||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct: 15721 aacgtttttgtattacttttatcttttttagaagagaccaaattcttcaagtcttttacg 15780
Query: 765 tttcgaac-ggattatgtttcaaagattttgtaacg-atgtttaattagctggcgatgat 822
|| |||| ||||||||||||| |||| |||||||| |||| | ||||||||||||||||
Sbjct: 15781 ttcggaacgggattatgtttcagagatcttgtaacgtatgtatcattagctggcgatgat 15840
Query: 823 ttttttatcccaatg-cttttgaagggtttgggggtatgtaaatttgtggcaccgggatt 881
|||||||| |||||| | |||| || | ||||||||||| ||||||||||| |||||||
Sbjct: 15841 ttttttatgccaatgccatttgtagtggttgggggtatgctaatttgtggcaacgggatt 15900
Query: 882 gg 883
||
Sbjct: 15901 gg 15902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8366
Number of Sequences: 1807
Number of extensions: 8366
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)