BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1318 0.0
>3x_Contig1590
Length = 13653
Score = 1318 bits (665), Expect = 0.0
Identities = 729/744 (97%), Gaps = 5/744 (0%)
Strand = Plus / Plus
Query: 85 taattcgatcgaacttatactttcttcactgttaaaaccatgtatcactttaaaattttt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 taattcgatcgaacttatactttcttcactgttaaaaccatgtatcactttaaaattttt 3866
Query: 145 caacattcgtcaaaagctttgaagcttcgaaaactgaaatccagttacagcttttatgat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 caacattcgtcaaaagctttgaagcttcgaaaactgaaatccagttacagcttttatgat 3926
Query: 205 agaagcggtaaatgaagataaactgtcgcgagtagttaagtattcagtggaaggcgaccc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 agaagcggtaaatgaagataaactgtcgcgagtagttaagtattcagtggaaggcgaccc 3986
Query: 265 aaggcgattttcgatttaggaagtaaaccgatatacttacggaaaattaagtaaggctta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 aaggcgattttcgatttaggaagtaaaccgatatacttacggaaaattaagtaaggctta 4046
Query: 325 tcaagacatcaaaaggaaaacaatggggaagagtagtaaagataaacgtgatctgtacta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4047 tcaagacatcaaaaggaaaacaatggggaagagtagtaaagataaacgtgatctgtacta 4106
Query: 385 cagaaaggctaaggaacaaggataccgtgcgagatccgctttcaagttattacagttaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4107 cagaaaggctaaggaacaaggataccgtgcgagatccgctttcaagttattacagttaga 4166
Query: 445 cgacgactttcattttttgcagcaggctgtacgagtggtggacctttgcgctgctccggg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4167 cgacgactttcattttttgcagcaggctgtacgagtggtggacctttgcgctgctccggg 4226
Query: 505 atcttggtctcaggtcttgtctagaagactatttcctcagagttcagataattcagatag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4227 atcttggtctcaggtcttgtctagaagactatttcctcagagttcagataattcagatag 4286
Query: 565 aaagattgttgcagttgatttgcagcccatgtcaccgatcgataatgtantcacattaca 624
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4287 aaagattgttgcagttgatttgcagcccatgtcaccgatcgataatgtaatcacattaca 4346
Query: 625 ggcgggatattacacatcnctaaaactctacaaaccattaccgagctttttgagggtaag 684
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4347 ggc-ggatattacacatc-ctaaaactctacaaaccataaccgagctttttgagggtaag 4404
Query: 685 aaagctgattttatttgtagcgatggtgcgccagatgtcaccggttt-cacgatttagac 743
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4405 aaagctgattttatttgtagcgatggtgcgccagatgtcaccggtttacacgatttagac 4464
Query: 744 gagtatg-tcaacagcaagttatttttagcgcattacagctat-taccctgttgttaaga 801
||||||| ||||||||| | ||||| |||||||||||||||| |||| |||||||||
Sbjct: 4465 gagtatgttcaacagcagttaattttaagcgcattacagctatctacctgtttgttaaga 4524
Query: 802 aaaggtggaaatttggttgccaaa 825
|||||||||||||| |||||||||
Sbjct: 4525 aaaggtggaaattttgttgccaaa 4548
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6356
Number of Sequences: 1807
Number of extensions: 6356
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)