BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF03RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1522 0.0
>3x_Contig1748
Length = 22566
Score = 1522 bits (768), Expect = 0.0
Identities = 851/874 (97%), Gaps = 4/874 (0%)
Strand = Plus / Plus
Query: 42 gctttgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccggcg 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7283 gctttgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccggcg 7342
Query: 102 cgagaaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacgcg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7343 cgagaaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacgcg 7402
Query: 162 cttttgctccccataatgcatcatattgattatcagtacgacctctttccattattatga 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7403 cttttgctccccataatgcatcatattgattatcagtacgacctctttccattattatga 7462
Query: 222 tacttagatgttactgctagcttaaaggcctccttattatgttattttccgtgcggtgag 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7463 tacttagatgttactgctagcttaaaggcctccttattatgttattttccgtgcggtgag 7522
Query: 282 ttaatgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttactttgc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7523 ttaatgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttactttgc 7582
Query: 342 ttcaatggaaatgatgaaattgtagagttgagaaccaaaaatcaaaaaacaccgtagaca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 ttcaatggaaatgatgaaattgtagagttgagaaccaaaaatcaaaaaacaccgtagaca 7642
Query: 402 ggtctacttagaggaggagtttctctgtaagttcaagtagactaaacgccatccactcta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 ggtctacttagaggaggagtttctctgtaagttcaagtagactaaacgccatccactcta 7702
Query: 462 gaagaattagaagcgcaataacggtaaaaaaagaggttatagttttatgcttacaagtaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7703 gaagaattagaagcgcaataacggtaaaaaaagaggttatagttttatgcttacaagtaa 7762
Query: 522 ccgaatataaaaaaattgtaaaacctatatatgcaaaatcaaataacctagttaaccaaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7763 ccgaatataaaaaaattgtaaaacctatatatgcaaaatcaaataacctagttaaccaaa 7822
Query: 582 gcagaagcagtggcggattcgtacttccagtttggtggncagacagaaacagttctgtag 641
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7823 gcagaagcagtggcggattcgtacttccagtttggtggcaagacagaaacagttctgtag 7882
Query: 642 tatctagccaatctgtgaattctggattcgatcaaaatcaatctgaatttagcatcctta 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7883 tatctagccaatctgtgaattctggattcgatcaaaatcaatctgaatttagcatcctta 7942
Query: 702 tcttttctgtttctttccaaatgctttctgacagagacagccttcttgattcagaaagta 761
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 7943 tcttttctgtttctttccaaatgctttctgacagagacagccttcttga-tcaagaagta 8001
Query: 762 caatctttctgggatttctggagccaaaccggtagactttcagatcctccaagatcttgt 821
||| ||||||||||||||||||||||||| ||||||| |||| || |||||||||||
Sbjct: 8002 caaatcttctgggatttctggagccaaaccgttagacttcaagattct-caagatcttgt 8060
Query: 822 taccagtaatgaccttancttgagtaacaccgtggacatttcttaacaggaaacggtatt 881
||||||||||||||||| |||||||||||||||| ||| ||| |||| || || | |||
Sbjct: 8061 taccagtaatgaccttagcttgagtaacaccgtgagcatctctcaacaagacaccg-att 8119
Query: 882 tgagatggagtcaaacccttttctggcgtacttg 915
|||||||||||||||||| |||||||||||||||
Sbjct: 8120 tgagatggagtcaaaccc-tttctggcgtacttg 8152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7262
Number of Sequences: 1807
Number of extensions: 7262
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)