BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF04FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1178 0.0
>3x_Contig1787
Length = 34189
Score = 1178 bits (594), Expect = 0.0
Identities = 711/740 (96%), Gaps = 8/740 (1%)
Strand = Plus / Minus
Query: 86 ttatattctgtggacgtggtgcgaagctaacaccgttttcca-tgttcgtggagacactg 144
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 23555 ttatattctgtggacgtggtgcgaagctaacaccgttttccaatgttcgtggagacactg 23496
Query: 145 gtgttcccaaagctctattgccggttgcaaaccgctccatgattgagttcgtactagatt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23495 gtgttcccaaagctctattgccggttgcaaaccgctccatgattgagttcgtactagatt 23436
Query: 205 ggtgtgagcaagcccaatttaaagaggtcaatctagttattgacgcatccgatgctgacg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23435 ggtgtgagcaagcccaatttaaagaggtcaatctagttattgacgcatccgatgctgacg 23376
Query: 265 aattagaggaaagtttgaaaaaataccgtgaagtgagagggcattattttggactgttat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23375 aattagaggaaagtttgaaaaaataccgtgaagtgagagggcattattttggactgttat 23316
Query: 325 cccaaagcgttggatcgaaccatgctcactatttgaaaaaaccatctcctattaatatta 384
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 23315 cccaaagcgttggatcgaaccatgctcactatttgaaaaa-ccatctnctattaatatta 23257
Query: 385 taccctcaaaatgtgagaatacaggagaatgtctgaagaatgaattgctagataagataa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23256 taccctcaaaatgtgagaatacaggagaatgtctgaagaatgaattgctagataagataa 23197
Query: 445 ctggagatttcgtgttgttaccttgtgatttcatcacagacattccaccacaggtgtttt 504
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 23196 ctggagatttcgtgttgttaccttttgatttcatcacagacattccaccacaggtgtttt 23137
Query: 505 tagatcagtatttgaataaagatccggagaatctagctatggcagtatattatcacaatg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23136 tagatcagtatttgaataaagatccggagaatctagctatggcagtatattatcacaatg 23077
Query: 565 ggtttgagaatatcgantagaagcatttaaagcaattcctgactgtatactccgagaatt 624
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23076 ggtttgagaatatcgataagaagcatttaaagcaattcctgactgtatactccgagaatt 23017
Query: 625 tggagtctgttagtaagcccgttcttctagacgtttattccaaagacgatgtgggacaaa 684
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 23016 tggagtctgttagtaagcccgttcttctagacgtttattccaaagacgatgt-ggacaaa 22958
Query: 685 cgaaaatttttac-aatcagat-ccaaatgctttggagatattccgacttctttttattc 742
|||| ||||| |||||||| ||||||||||||||||||| | ||| || | ||| |
Sbjct: 22957 acgaaatatttacaaatcagatcccaaatgctttggagatatccgaactcctctgtatcc 22898
Query: 743 acaaaattactgaactc-cttcatttacttttgcttctcatgaagttagtaacctttttg 801
||||||||||||||||| |||||||||||||||| ||||||| ||||||||| | | |||
Sbjct: 22897 acaaaattactgaactctcttcatttacttttgc-tctcatg-agttagtaaacctattg 22840
Query: 802 aaggttgaaaaccagaaagg 821
|||| ||||| | |||||||
Sbjct: 22839 aaggatgaaaccgagaaagg 22820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6277
Number of Sequences: 1807
Number of extensions: 6277
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)