BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZF04RM1.SCF screened BAC_end
         (911 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1103                                                        1302   0.0  

>3x_Contig1103 
          Length = 3850

 Score = 1302 bits (657), Expect = 0.0
 Identities = 706/715 (98%), Gaps = 6/715 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   gtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaatctttcagttg 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  gtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaatctttcagttg 483

                                                                        
Query: 110  caaatcaggttatacctcaaaatattctactacctaacacattcctggcatggtatttat 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  caaatcaggttatacctcaaaatattctactacctaacacattcctggcatggtatttat 543

                                                                        
Query: 170  ccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatatggtctagtat 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  ccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatatggtctagtat 603

                                                                        
Query: 230  gtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagctgttttgatg 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  gtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagctgttttgatg 663

                                                                        
Query: 290  atcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggcattgttaatg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  atcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggcattgttaatg 723

                                                                        
Query: 350  cgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctcatctttactca 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  cgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctcatctttactca 783

                                                                        
Query: 410  atgatattagatctttggaagttatcgacaaactactactgcggggaataattgcacaga 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  atgatattagatctttggaagttatcgacaaactactactgcggggaataattgcacaga 843

                                                                        
Query: 470  aaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctttcttccttag 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  aaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctttcttccttag 903

                                                                        
Query: 530  ctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttcgggtcttata 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  ctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttcgggtcttata 963

                                                                        
Query: 590  tgaaaaccttacgaaaagaatatggttttgcttctttcaac-aaatgttcaagattgtca 648
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 964  tgaaaaccttacgaaaagaatatggttttgcttctttcaacaaaatgttcaagattgtca 1023

                                                                        
Query: 649  caatgttggtgaccagttcagaaagatgggacctttatcaggtgactgnncattctaagc 708
            ||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||
Sbjct: 1024 caatgttggtgaccagttcagaaagatgggacctttatcagttgactgca-attctaagc 1082

                                                                   
Query: 709  tggactttttgatatttttcgaagaatatacatattctagtgggatgctttcttt 763
            ||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1083 tggac-ttttgata-ttttcgaagaatatacata-tctagt-ggatgctttcttt 1133


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8535
Number of Sequences: 1807
Number of extensions: 8535
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)