BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1201 0.0
>3x_Contig1594
Length = 9813
Score = 1201 bits (606), Expect = 0.0
Identities = 672/690 (97%), Gaps = 3/690 (0%)
Strand = Plus / Plus
Query: 87 tggaagattgaaattcttgagagaatataaaggtaacaaagcaatggtacgtatactctg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 tggaagattgaaattcttgagagaatataaaggtaacaaagcaatggtacgtatactctg 3024
Query: 147 gtcataaagagatgaggtgaccgatgttatacagacaagttctgcaaagacccatattgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 gtcataaagagatgaggtgaccgatgttatacagacaagttctgcaaagacccatattgc 3084
Query: 207 agaaatcaattctatttgtttaaaaaatggtggctgatacagatgtcaaagagattgttg 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 agaaatcaattctagttgtttaaaaaatggtggctgatacagatgtcaaagagattgttg 3144
Query: 267 tagatgcacttcctgaggtttctgaacctgcagctgttgatgacagtgaagtgacagagg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 tagatgcacttcctgaggtttctgaacctgcagctgttgatgacagtgaagtgacagagg 3204
Query: 327 atgctaccgtgcaggataagaagaaaaagaagaagaagaagaagaagaagggtaataata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 atgctaccgtgcaggataagaagaaaaagaagaagaagaagaagaagaagggtaataata 3264
Query: 387 tgaagaacattgctttaatataccctgatgagaaataccctgagggacagtggatggaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 tgaagaacattgctttaatataccctgatgagaaataccctgagggacagtggatggaat 3324
Query: 447 accatcaagatttcaatctgaaaagagttaccgatgaagagaggagatacttggaaagaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 accatcaagatttcaatctgaaaagagttaccgatgaagagaggagatacttggaaagaa 3384
Query: 507 gtgaagagtacgaacaaaggtgtaatgatatgcgtaaaggtgctgagattcaccgtcgtg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 gtgaagagtacgaacaaaggtgtaatgatatgcgtaaaggtgctgagattcaccgtcgtg 3444
Query: 567 taagggaaagtgttagaaataagatcaagccggggtatgacattgactgagattgctaat 626
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3445 taagggaaagtgttagaaataagatcaagcc-gggtatgacattgactgagattgctaat 3503
Query: 627 ttggntgaaagacgggacttagaagtttactggcactgatgccaatggggatcacgttga 686
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ttgg-tggaagacgggactagaaagtttactggcactgatgccaatggggatcacgttga 3562
Query: 687 tagacc-aagagcaaagtatttgcgttccccactggtctatcgctcacccactgggctgc 745
|||||| |||||| ||| |||||||||| |||||||||||||||| |||||| |||||
Sbjct: 3563 tagaccaaagagccaaggtattgcgttcccaactggtctatcgctcaaccactgtgctgc 3622
Query: 746 tcatttcactccttaagctggggacaagac 775
||||||||||||| | ||||| ||||||||
Sbjct: 3623 tcatttcactcctaatgctggtgacaagac 3652
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9239
Number of Sequences: 1807
Number of extensions: 9239
Number of successful extensions: 675
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)