BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1168 0.0
>3x_Contig1724
Length = 20938
Score = 1168 bits (589), Expect = 0.0
Identities = 717/745 (96%), Gaps = 11/745 (1%)
Strand = Plus / Minus
Query: 45 ttttttacaagtttcaattccactagattccttcatcttgaggacagtaacgtataagtt 104
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 19404 tttttcacaagtttcaattccactag-ttccttcatcttgaggacagtaacgtataagtt 19346
Query: 105 cctcttgactaggtaaaactcattgtcttcaataaatttctcatagagtttcaagttgcc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19345 cctcttgactaggtaaaactcattgtcttcaataaatttctcatagagtttcaagttgcc 19286
Query: 165 agtgcataaacttttcaccaacatggtgtatattttagccactgatgggtatgttcgtct 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 19285 agtgcataaacttttcaccaacatggtgtatattttagccactgatgggtatgtccgtct 19226
Query: 225 taacggtgctaaccttggataatgtcttaaatgtaatatcctcattggaattagatatat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19225 taacggtgctaaccttggataatgtcttaaatgtaatatcctcattggaattagatatat 19166
Query: 285 tagcacttggcttcttaccttgtacgtggaaggtatgctctcatacaaggtacagatgtc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19165 tagcacttggcttcttaccttgtacgtggaaggtatgctctcatacaaggtacagatgtc 19106
Query: 345 aaaagtctcttgcagccatttgaatcccaatgcgtagttattcttctcatacccgtagta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19105 aaaagtctcttgcagccatttgaatcccaatgcgtagttattcttctcatacccgtagta 19046
Query: 405 tagccccatgtaaaatttgaatcgaatgacaattaaatcattattgattcgagaaaggta 464
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 19045 tagccccatgtaaaatttgaatcgaatgacaagtaaatcattattgattcgagaaaggta 18986
Query: 465 cggtccgatttcattgaaatgagattcgaacactttacacatgttgttcaataatccata 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18985 cggtccgatttcattgaaatgagattcgaacactttacacatgttgttcaataatccata 18926
Query: 525 cgctttgatccggttgtacaacttgaacagcaatgtaccaatgtagaaaacaccgatttt 584
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18925 cgctttgatccggttgtacaacttgaacaacaatgtaccaatgtagaaaacaccgatttt 18866
Query: 585 ccta-tttcatccactctttcgttacgatctttg-aacatatg-ttaacgtcatatgcat 641
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 18865 cctattttcatccactctttcgttacgatctttgaaacatatgtttaacgtcatatgcat 18806
Query: 642 cattct-cctgcctg-attaaataggattcttcct-atct-catttttcgtattttctgg 697
|| ||| |||||||| || |||||||||||||||| |||| ||| | |||| ||||||
Sbjct: 18805 cactctccctgcctgaatcaaataggattcttcctcatctccatctccggtatcttctgg 18746
Query: 698 tacgtccagcttgttttggatctc-tctagcttattggc-atggcatacagttgtttttc 755
| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |
Sbjct: 18745 tccgtccagcttgttttggatctcatctagcttattggcaatggcatacagttgttctcc 18686
Query: 756 attttggtat-acaactccggcatc 779
| | |||||| ||||||||| ||||
Sbjct: 18685 actctggtataacaactccgtcatc 18661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7678
Number of Sequences: 1807
Number of extensions: 7678
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)