BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF06FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1316 0.0
>3x_Contig1383
Length = 6139
Score = 1316 bits (664), Expect = 0.0
Identities = 787/816 (96%), Gaps = 11/816 (1%)
Strand = Plus / Minus
Query: 87 tcttttcaaaatgtgaccacgagacaaattaggagataacttggagacgtaatggtataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 tcttttcaaaatgtgaccacgagacaaattaggagataacttggagacgtaatggtataa 2124
Query: 147 ttcatcacatttttctttaacgacttccactgcatcactggtttctggtaattcaaccag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2123 ttcatcacatttttctttaacgacttccactgcatcactggtttctggtaattcaaccag 2064
Query: 207 agtatcaccttcaccgcacacatacacttcatcctttcttgcatacatttctggcgagaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2063 agtatcaccttcaccgcacacatacacttcatcctttcttgcatacatttctggcgagaa 2004
Query: 267 atacttgttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttccggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 atacttgttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttccggt 1944
Query: 327 ggatggtttgattgtgatggaatgtgctcttaaaccagagattggacaatccggcaatag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 ggatggtttgattgtgatggaatgtgctcttaaaccagagattggacaatccggcaatag 1884
Query: 387 tctagaagtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaactgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1883 tctagaagtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaactgg 1824
Query: 447 ttcttgtaaacgttgttcttctggatcatcaactgttggaatgtacgatactcccgctgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 ttcttgtaaacgttgttcttctggatcatcaactgttggaatgtacgatactcccgctgc 1764
Query: 507 ggcacactgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactgcccc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 ggcacactgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactgcccc 1704
Query: 567 agtctncattgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgagcagt 626
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 agtctccattgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgagcagt 1644
Query: 627 ggagtcagttccaccaagagatgaccaatctctcaccaaccgttttttgattcagttcaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1643 ggagtcagttccaccaagagatgaccaatctctcaccaaccgttttttgatccagttcaa 1584
Query: 687 atcacttagtagacgtaatgggtctttagataatgcaatcgaggattttgtattcaactt 746
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1583 atcactaggtagacgtaatgggtctttagataatgcaatcgaggattttgtatccaactc 1524
Query: 747 cgatgcaagtggcctcgnccttcttatcatcttctccgtaacttatatt-gtaatttttc 805
||||||| ||| ||||| ||| | |||||||||||||||||| ||||| ||||| || |
Sbjct: 1523 cgatgcaggtg-cctcgtcctcttcatcatcttctccgtaact-atattcgtaatctt-c 1467
Query: 806 gtcgtctttacag-ggtgcccactctggaaaacagtttcgtttttcaccacttgccatgc 864
|||||||| ||| ||||||||||||||||| ||| |||||| ||||||||| |||||
Sbjct: 1466 gtcgtctt--cagtggtgcccactctggaaa-caggttcgttgttcaccactgcacatgc 1410
Query: 865 cttttntggaatttcttttttctgcgatggctttgc 900
|||| |||| ||||||||| |||||||||||||||
Sbjct: 1409 -ttttttgga-tttcttttt-ctgcgatggctttgc 1377
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6307
Number of Sequences: 1807
Number of extensions: 6307
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)