BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF06RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1342 0.0
>3x_Contig1496
Length = 9544
Score = 1342 bits (677), Expect = 0.0
Identities = 781/804 (97%), Gaps = 9/804 (1%)
Strand = Plus / Plus
Query: 47 ttatctctcaattggaatggctttac-agcggccttgggtgttggctgtggtatgagaga 105
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8236 ttatctctcaattggaatggctttaccagcggccttgggtgttggctgtggtatgagaga 8295
Query: 106 ctatccaagatcccatattgtagatcaagcacttgttcctaaagattacattcctagact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 ctatccaagatcccatattgtagatcaagcacttgttcctaaagattacattcctagact 8355
Query: 166 aatcttatgtgaaggagatggtgctgcccaaatgactatccaagaatttgcatcatacat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 aatcttatgtgaaggagatggtgctgcccaaatgactatccaagaatttgcatcatacat 8415
Query: 226 tcgttataagatcccaatggaaatacttgtatggaacaataacggttatactgttgagag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tcgttataagatcccaatggaaatacttgtatggaacaataacggttatactgttgagag 8475
Query: 286 agctataaatggccctactaggagttacaatgacattgctcctttcaaatggacagcatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 agctataaatggccctactaggagttacaatgacattgctcctttcaaatggacagcatt 8535
Query: 346 attgaacgtctttggcgacttcgaaaataaattcaacgagtctgttaccgtcgagaaaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8536 attgaacgtctttggcgacttcgaaaataaattcaacgagtctgttaccgtcgagaaaaa 8595
Query: 406 cgatgagttagttcaacttctcaataaatggaaatcttgtaaggaaagggcaaacatcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8596 cgatgagttagttcaacttctcaataaatggaaatcttgtaaggaaagggcaaacatcaa 8655
Query: 466 attagctgaagttatgcttccagtaatggatataccacaagaattgaatgcaatgctagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8656 attagctgaagttatgcttccagtaatggatataccacaagaattgaatgcaatgctagt 8715
Query: 526 caatggaaaaccaaattgaagtcaagccaacatgtcagtttataactttttccttctttc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8716 caatggaaaaccaaattgaagtcaagccaacatgtcagtttataactttttccttctttc 8775
Query: 586 ncatggc-agaagtgataatgtaattgtctataaatttgaatgttgaagaatgtgaaaac 644
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8776 -catggcaagaagtgataatgtaattgtctataaatttgaatgttgaagaatgtgaaaac 8834
Query: 645 ggtaaatagttttagttcttattcttttaatgagggcgtaatttcttgatttaaccagtg 704
|||||||||||| || ||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 8835 ggtaaatagtttaag-tcttattctttaaatgagggcgtaa-ttcttgattaaaccagtg 8892
Query: 705 attttgagtcagacataagttataacttgaattgccttactgaatagaggcatatcgaaa 764
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8893 atttgaggtcagacataagttataacttgaattgccttactgaatagaggcatatcgtaa 8952
Query: 765 tatttttattttttattggccttttttgggaattgccagtcccattnaagattatatgtt 824
|||||||| ||||||| |||| |||||||||| ||| ||||| ||| || |||||||||
Sbjct: 8953 tattttta-tttttataggcc-tttttgggaa-tgcgagtccaatttaaagttatatgtt 9009
Query: 825 ggctaatttgtttagaggaaatat 848
||||| |||||||||||||||||
Sbjct: 9010 -gctaaattgtttagaggaaatat 9032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7812
Number of Sequences: 1807
Number of extensions: 7812
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)