BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF07FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1445 0.0
>3x_Contig1541
Length = 10565
Score = 1445 bits (729), Expect = 0.0
Identities = 790/803 (98%), Gaps = 6/803 (0%)
Strand = Plus / Plus
Query: 87 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7215 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 7274
Query: 147 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7275 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 7334
Query: 207 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7335 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 7394
Query: 267 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 7454
Query: 327 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 7514
Query: 387 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7515 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 7574
Query: 447 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7575 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttgg 7634
Query: 507 ttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7635 ttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactatc 7694
Query: 567 cacgtgaatatcacgtggatcatacggaaagagattaaacctattttgacaatggtaaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7695 cacgtgaatatcacgtggatcatacggaaagagattaaacctattttgacaatggtaaga 7754
Query: 627 atttgaatacttcaagatatgatganagcatgatatttatgtangaaagtttactcagaa 686
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 7755 atttgaatacttcaagatatgatgaaagcatgatatttatgtaggaaagtttactcagaa 7814
Query: 687 gtgatttgaaactgtttattcaggac-acagtttccgattcaaaatatactgagaga-ta 744
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 7815 gtgatttgaaactgttta-tcaggacaacagtttccgattcaaaatatactgagagatta 7873
Query: 745 tttcaacaattgcttgtttgatgactggctgaactcttttctttgatgattaaccaagca 804
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 7874 tttcaacaattgcttgtttgatgactgcctgaactcttttctttgatgattaacaaagca 7933
Query: 805 gcacctgggttgttttcttcaaatt-agtaaggggtaaccggggtcaaacgctattgtaa 863
|||||||||||| |||| ||||||| |||| ||||| |||||||||||||||||||| ||
Sbjct: 7934 gcacctgggttg-tttcctcaaattcagtatggggt-accggggtcaaacgctattgaaa 7991
Query: 864 ccgatgatgatcccatttatggg 886
|||||||||||||||||||||||
Sbjct: 7992 ccgatgatgatcccatttatggg 8014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6995
Number of Sequences: 1807
Number of extensions: 6995
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)