BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF07RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1506 1283 0.0
>3x_Contig1506
Length = 7652
Score = 1283 bits (647), Expect = 0.0
Identities = 705/721 (97%), Gaps = 4/721 (0%)
Strand = Plus / Minus
Query: 47 tagtattctttagtaacctcatttactaagaattgccacatctaaggactaaatcttttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 tagtattctttagtaacctcatttactaagaattgccacatctaaggactaaatcttttt 4673
Query: 107 tgttcaggttctacacaacgaaaacaatgtctcaatacactgatatcgatcgtttagccg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 tgttcaggttctacacaacgaaaacaatgtctcaatacactgatatcgatcgtttagccg 4613
Query: 167 ttagcacgatcagattgttagcagtcgaccaagtctctgctgccaactctggtcatccag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4612 ttagcacgatcagattgttagcagtcgaccaagtctctgctgccaactctggtcatccag 4553
Query: 227 gtgccccattgggtttggctccagctgcccatgtgatctggaagcaaatgagattgaatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4552 gtgccccattgggtttggctccagctgcccatgtgatctggaagcaaatgagattgaatc 4493
Query: 287 ctaagaatccagaatggatcaaccgtgacagatttgtcttgtccaacggtcatgcctgtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4492 ctaagaatccagaatggatcaaccgtgacagatttgtcttgtccaacggtcatgcctgtg 4433
Query: 347 cattgttgtactctttgttacacttgttcggttacgacatgtccatcgaagatttgaagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4432 cattgttgtactctttgttacacttgttcggttacgacatgtccatcgaagatttgaagc 4373
Query: 407 atttcagacatctgggttctaagacccctggtcacccagaatttgaattgccgggtgttg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4372 atttcagacatctgggttctaagacccctggtcacccagaatttgaattgccgggtgttg 4313
Query: 467 aagttactaccggtccattgggtcaaggtatctctaacgctgttggtatggctattgctc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4312 aagttactaccggtccattgggtcaaggtatctctaacgctgttggtatggctattgctc 4253
Query: 527 aagccaacttcgctgccacttacaacaagccagattacgaattgtctgattcttacactt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4252 aagccaacttcgctgccacttacaacaagccagattacgaattgtctgattcttacactt 4193
Query: 587 acgttttcttgggtgacggttgtttgcaagaaggtgtttcttctgaagcctcttctttgg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4192 acgttttcttgggtgacggttgtttgcaagaaggtgtttcttctgaagcctcttctttgg 4133
Query: 647 caggtcatttngaggtgaagaacttgattgccttct-tgattgata--ccaattaccatc 703
|||||||||| | ||||||||||||||||||||| ||| ||||| | ||||||||||
Sbjct: 4132 caggtcatttgaggttgaagaacttgattgccttctatga-tgataaccaaattaccatc 4074
Query: 704 gatggtaacatcaaacgttctttcgatgaagacgtttgccagagattcgaaacctacggt 763
|||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||||
Sbjct: 4073 gatggtaacatcaacgtttctttcgatgaagacgttagcaagagatacgaagcctacggt 4014
Query: 764 t 764
|
Sbjct: 4013 t 4013
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6069
Number of Sequences: 1807
Number of extensions: 6069
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)