BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF08FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1366 0.0
>3x_Contig1770
Length = 29267
Score = 1366 bits (689), Expect = 0.0
Identities = 755/769 (98%), Gaps = 6/769 (0%)
Strand = Plus / Minus
Query: 88 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 12137
Query: 148 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12136 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 12077
Query: 208 ttcagcctatatctttttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 267
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 ttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 12017
Query: 268 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 11957
Query: 328 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 11897
Query: 388 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11896 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 11837
Query: 448 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11836 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 11777
Query: 508 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11776 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 11717
Query: 568 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaaga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaaga 11657
Query: 628 aaaactacgcgacgttactactacattgaaggatgtacaggagggatcttctcaatatca 687
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11656 aaaactacgcgacgttactactacattgaaggatgtacagga-ggatcttctcaatatca 11598
Query: 688 ttagctcaaaggatgtatttaattggacattcgttgcagtcggaccttaacgttttaaag 747
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11597 ttagctcaaaggatgta-ttaattggacattcgttgcagtcggaccttaacgttttaaag 11539
Query: 748 cttaagacattccaatatcgttgacacggcagttatttaccagcacaaagcaggttcttt 807
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct: 11538 c-taagacatcccaatatcgttgacacggcagttatttacgagcacaaagcagg-tcctc 11481
Query: 808 cattcagaccagcccttaaggtttttgcccctcggaatatttgaatgtt 856
||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 11480 cattcagaccagccc-taaggtatttg-gcctcggaatatttgaatgtt 11434
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7572
Number of Sequences: 1807
Number of extensions: 7572
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)