BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF08RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1522 0.0
>3x_Contig1595
Length = 10795
Score = 1522 bits (768), Expect = 0.0
Identities = 822/836 (98%), Gaps = 4/836 (0%)
Strand = Plus / Plus
Query: 42 atgagtacttctccggcaaacaattgattgaatccattaggaaacagtatcctgatagcg 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1658 atgagtacttctccggcaaacaattgattgaatccattaggaaacagtatcctgatagcg 1717
Query: 102 ttgtttctttgtaccaacaagaaaaattgggccaatggttcatgagtgaaggttacatgg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 ttgtttctttgtaccaacaagaaaaattgggccaatggttcatgagtgaaggttacatgg 1777
Query: 162 ctcattataacgatctcctcggggtgaggaaagcgttcagttgtaacggctactactgct 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1778 ctcattataacgatctcctcggggtgaggaaagcgttcagttgtaacggctactactgct 1837
Query: 222 ggaaagaactggatcagcagaaatctgtcaagtacaacctggcaacggtgaacggattaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1838 ggaaagaactggatcagcagaaatctgtcaagtacaacctggcaacggtgaacggattaa 1897
Query: 282 tttgggaacaatggagtaaatatacgatgcaaaagttacagtttgaaacgaaccatttca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 tttgggaacaatggagtaaatatacgatgcaaaagttacagtttgaaacgaaccatttca 1957
Query: 342 atcagatggatcaattagcacagctgagagaagagctagtgcaaacaatgaagcatttca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 atcagatggatcaattagcacagctgagagaagagctagtgcaaacaatgaagcatttca 2017
Query: 402 acggtacactggaggatacatggcacattacaagcaaggaaagtgtaaaacccagcagtg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 acggtacactggaggatacatggcacattacaagcaaggaaagtgtaaaacccagcagtg 2077
Query: 462 taacggtacaatccatgtatgagcagaacatgggcagtattggtttttacgtgacatcga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 taacggtacaatccatgtatgagcagaacatgggcagtattggtttttacgtgacatcga 2137
Query: 522 acgaacctataatcaagtacaatagtgagacaacaaagtttgaaatgactagtccaatac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 acgaacctataatcaagtacaatagtgagacaacaaagtttgaaatgactagtccaatac 2197
Query: 582 ctgatgatattacaggcaactcccttctacacaggctaatagatgagattgagattgaga 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 ctgatgatattacaggcaactcccttctacacaggctaatagatgagattgagattgaga 2257
Query: 642 ctgangatcacgtagagaacatcaaacggtgttggataaccgaatttgatttgatcaact 701
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 ctgaggatcacgtagagaacatcaaacggtgttggataaccgaatttgatttgatcaact 2317
Query: 702 ggcatcgaatcaaggaggacctattgagaagatggatgcgcgttcaaactggtgatnaag 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2318 ggcatcgaatcaaggaggacctattgagaagatggatgcgcgttcaaactggtgataaag 2377
Query: 762 atgactacgcgagttttgaatttgacactggaaaaagaaagttctactactgtaaggctg 821
||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct: 2378 atgactacgcgag-tttgaatttgacactgg-aaaagaaagttctactactgaagggctg 2435
Query: 822 nttcatcgaatttnatgatatcgataatacccattgagtatttgcgaggaaagcgt 877
|||||||||| ||||| ||||||||||||| |||| || ||||||||||||||
Sbjct: 2436 gctcatcgaattggatgat-tcgataatacccagtgag-atatgcgaggaaagcgt 2489
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6262
Number of Sequences: 1807
Number of extensions: 6262
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)