BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF09FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig757 1346 0.0
>3x_Contig757
Length = 2436
Score = 1346 bits (679), Expect = 0.0
Identities = 764/783 (97%), Gaps = 7/783 (0%)
Strand = Plus / Plus
Query: 86 tgggtagacaacagaacgttgaggtgaaattacctaatttcgctagaaatattgaaatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgggtagacaacagaacgttgaggtgaaattacctaatttcgctagaaatattgaaatta 313
Query: 146 acttgccatcgatcgatgttagcactgcaagccaaaatcaattaaggactttcttgacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acttgccatcgatcgatgttagcactgcaagccaaaatcaattaaggactttcttgacaa 373
Query: 206 agaacaccacccattatttgttgagcagaacagcattagacttcggctcaactgaagcta 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agaacaccacccagtatttgttgagcagaacagcattagacttcggctcaactgaagcta 433
Query: 266 agctgcaacagtttgttgaaaactatcaagccgttttagcgcaaaactcggttgctgaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agctgcaacagtttgttgaaaactatcaagccgttttagcgcaaaactcggttgctgaca 493
Query: 326 tttacgacaaatacgtatcccaatacaaacagctgttaactcaaaaggctactgaatctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttacgacaaatacgtatcccaatacaaacagctgttaactcaaaaggctactgaatctg 553
Query: 386 aaacgacagaagaagctcatgcagatgcacaagcagaagaaacgaaataaaggatagact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacgacagaagaagctcatgcagatgcacaagcagaagaaacgaaataaaggatagact 613
Query: 446 tatccgtaaccaatatttcccagaaccgttcatgtatatatatataagaatcaacgtcag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tatccgtaaccaatatttcccagaaccgttcatgtatatatatataagaatcaacgtcag 673
Query: 506 ttaagaatattactagaaattcaaaaaacattaacaaaatgaccataattcataaagaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttaagaatattactagaaattcaaaaaacattaacaaaatgaccataattcataaagaaa 733
Query: 566 ctcacacaatatacttctattatataattattgatgtgccgtcacggattcatcgcaaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ctcacacaatatacttctattatataattattgatgtgccgtcacggattcatcgcaaat 793
Query: 626 tgagtaaat-gttcgtcaattagcgcctggtaccatgtcactcccgctagccaactcggg 684
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgagtaaatcgttcgtcaa-tagcgcctggtaccatgtcactcccgctagccaactcggg 852
Query: 685 cactgagtttgttcgatctgcaaggaaatcaccgtcaacgagttttccatcattcttttt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 cactgagtttgttcgatctgcaaggaaatcaccgtcaacgagttttccatcattcttttt 912
Query: 745 tagaatttcaa-tttggggaaattattc-aaagctgacttaattacc-atcgatgaactc 801
|||||||||| ||||| |||||||||| ||||||||| ||| |||| |||||||| |||
Sbjct: 913 aagaatttcaattttggtgaaattattcaaaagctgacataaataccaatcgatgatctc 972
Query: 802 gcatttcctgtgatccaccggaaat-ttttggc-aataacggtttcctttgaggtttcaa 859
||| ||||||||||||| ||||||| | ||||| ||||||||| | ||||||||| ||||
Sbjct: 973 gcagttcctgtgatccaacggaaatctattggcaaataacggtatactttgaggtatcaa 1032
Query: 860 atc 862
|||
Sbjct: 1033 atc 1035
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9484
Number of Sequences: 1807
Number of extensions: 9484
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)